PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281735.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 352aa MW: 38521.8 Da PI: 7.7921

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	176	230	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_021281735.1 176 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 230 778899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.5e-41	176	266	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_021281735.1 176 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 266 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MELALSLGDP SKPFSFLDKA PKLSSKDLGF CMGLGNGFRS QEKGDAXEGE SRGEATRDGD 60 DKRVSSDPPL QLDLLPFSPV PRSQPPSQLR FPWLADNQTG SSEGPGRGLD VNRLPVVAVM 120 DEAEEGAALS SPNSAVSSFQ MDFGLNGSGR GKRDLEVENE RASSRASDDD ENGSTRKKLR 180 LSKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY 240 LKRCCETLTE ENRRLQKELQ ELRALKTSQP FYMQLPATTL TMCPSCERVA TTSTTANSTA 300 AAANTTNVAA AAGSNTDAKT GVLPLTKTRG YPFSPLQTHV PQTQPQAHQA AS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MELALSLGDP SKPFSFLDKA PKLSSKDLGF CMGLGNGFRS QEKGDAXEGE SRGEATRDGD  60
DKRVSSDPPL QLDLLPFSPV PRSQPPSQLR FPWLADNQTG SSEGPGRGLD VNRLPVVAVM  120
DEAEEGAALS SPNSAVSSFQ MDFGLNGSGR GKRDLEVENE RASSRASDDD ENGSTRKKLR  180
LSKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY  240
LKRCCETLTE ENRRLQKELQ ELRALKTSQP FYMQLPATTL TMCPSCERVA TTSTTANSTA  300
AAANTTNVAA AAGSNTDAKT GVLPLTKTRG YPFSPLQTHV PQTQPQAHQA AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	181	TRKKLRL
2	225	233	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-88	HD-ZIP family protein