PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281730.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 421aa MW: 46572.8 Da PI: 8.6051

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.1	3.8e-17	64	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_021281730.1 64 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 123 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MASTSSSDPG MKAEASGGEN SETAIANDQL LLYRGLKKAK KERGCTAKER ISKMPPCTAG 60 KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK 120 YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRG LSSSRWDSSF 180 GRVSGSEYFS SIHYSDDAAT ESDYIGGFCI ERKIDLTGYI KWWGTNKTCQ AEPGAKSSEE 240 AKHACPEDIG SELKTSEWAV QPTEPYQMPR LGTSLEGTKR KGSSVSALSI LSRSADFKSL 300 QEKALKKQEN SADKDENENK KTINKMDHGK AAEKSVHHDT GSDSLGATLG MSTGLSLQKN 360 VFPLTPFLSA PLLTNYNTMD SLVDPGLWTS LVPVLPSGPS RNPEVSKTET SSTYTFFRPE 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MASTSSSDPG MKAEASGGEN SETAIANDQL LLYRGLKKAK KERGCTAKER ISKMPPCTAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK  120
YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRG LSSSRWDSSF  180
GRVSGSEYFS SIHYSDDAAT ESDYIGGFCI ERKIDLTGYI KWWGTNKTCQ AEPGAKSSEE  240
AKHACPEDIG SELKTSEWAV QPTEPYQMPR LGTSLEGTKR KGSSVSALSI LSRSADFKSL  300
QEKALKKQEN SADKDENENK KTINKMDHGK AAEKSVHHDT GSDSLGATLG MSTGLSLQKN  360
VFPLTPFLSA PLLTNYNTMD SLVDPGLWTS LVPVLPSGPS RNPEVSKTET SSTYTFFRPE  420
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-168	AP2 family protein