PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281722.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 456aa MW: 50866.7 Da PI: 5.26

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	230	284	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+ LGGse+AtPk il+lmkv+gLt++hvkSHLQkYR+ XP_021281722.1 230 KPRMRWTPELHEAFVEAVNLLGGSERATPKGILNLMKVEGLTIYHVKSHLQKYRT 284 79****************************************************8 PP
2	Myb_DNA-binding	55.1	1.7e-17	232	283	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av++lGg t+k I + m +g+t +++ks++qky+ XP_021281722.1 232 RMRWTPELHEAFVEAVNLLGGSeraTPKGILNLMKvEGLTIYHVKSHLQKYR 283 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MSSSFPALPT PFKEKYPKLP DSFQVSSGRK VMKNSVSPQE SSLAPCNRTL GNSFSSPSIA 60 NNDMFASALA HDRHSQSPAF ICQPSRDAAS LPSIDSLYSD QSTALFNHPQ EKKDVSWCID 120 RLQDFLDLPE NVRVPNGLLE SGTGVMASED HSKRTDWQEW ADQLISVDDA LDTDWKEFLD 180 DTNASDPKLK VLNSSGDISK QQPQFQQNQP APHGEFSSDA YPLSTAPPTK PRMRWTPELH 240 EAFVEAVNLL GGSERATPKG ILNLMKVEGL TIYHVKSHLQ KYRTARYKPE SSEGTLENKM 300 TSIGEMKSLD LKAGMGITEA LRLQMEVQKQ LHDQLEIQRN LQLRIEEQGR YLQMMFEKQK 360 KMEDERSGAP SFDLDDASTP LPGLTYPSCA NDKSEALEQV HTKTGIDRRN ASTTEDESSQ 420 DVSRKQKALE TNPAGHIEAN DNEPGSPLSK RARTEK

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MSSSFPALPT PFKEKYPKLP DSFQVSSGRK VMKNSVSPQE SSLAPCNRTL GNSFSSPSIA  60
NNDMFASALA HDRHSQSPAF ICQPSRDAAS LPSIDSLYSD QSTALFNHPQ EKKDVSWCID  120
RLQDFLDLPE NVRVPNGLLE SGTGVMASED HSKRTDWQEW ADQLISVDDA LDTDWKEFLD  180
DTNASDPKLK VLNSSGDISK QQPQFQQNQP APHGEFSSDA YPLSTAPPTK PRMRWTPELH  240
EAFVEAVNLL GGSERATPKG ILNLMKVEGL TIYHVKSHLQ KYRTARYKPE SSEGTLENKM  300
TSIGEMKSLD LKAGMGITEA LRLQMEVQKQ LHDQLEIQRN LQLRIEEQGR YLQMMFEKQK  360
KMEDERSGAP SFDLDDASTP LPGLTYPSCA NDKSEALEQV HTKTGIDRRN ASTTEDESSQ  420
DVSRKQKALE TNPAGHIEAN DNEPGSPLSK RARTEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	1e-101	G2-like family protein