PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281654.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 319aa MW: 35780.6 Da PI: 8.3366

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	6.1e-25	75	119	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_021281654.1 75 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 119 79****************************************986 PP
2	QLQ	63.6	5.2e-22	13	49	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvP++L+++iqk XP_021281654.1 13 SPFTVSQWQELEHQALIFKYMMAGLPVPHDLVLPIQK 49 89*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MGTGGGMMAM RSSPFTVSQW QELEHQALIF KYMMAGLPVP HDLVLPIQKS FESVSHRFFH 60 HPTMGYCSFY GKKVDPEPGR CRRTDGKKWR CSKDAYPDSK YCERHMHRGR NRSRKPVESQ 120 TMTQSSSTVT SLTVSGSSGG TGSFQNLPLH AFGSTQGTAS GTSQSHYHME SIPYGIPSKD 180 YRYLQGLKPE VGEHSFFSEA SGSNRGLQIE TQLDNTWPLM QSRVSSYPQS KSSGSHILQN 240 DYPQHSFFSN EFNSGEPVKH EGQSLRPFFD EWPKPRDSWS ALEDERSNQT SFSTTQLSIS 300 IPMASSDFST TSSRSPHDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-44	GRF family protein