PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281551.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TALE

Protein Properties

Length: 328aa MW: 36746.3 Da PI: 4.6483

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.8	4.3e-09	259	292	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ XP_021281551.1 259 WPYPTEEEKLQLSEITGLDQKQINNWFINQRKRH 292 59*****************************885 PP
2	ELK	37	7.2e-13	212	233	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K +L+rKYsgyL+sL++EF+ XP_021281551.1 212 DIKGMLMRKYSGYLSSLRKEFL 233 58*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MEDMYRLDNP AISRSNDIVR VDNFAAANFS GAVTTDFLSP VDNILQFDHQ AADTDVTGSD 60 MSDLIKTQIA SHPRYPNLVS AYIECQKIGA PPELVSLLEE IGRENHPIRG CSEIGADPEL 120 DEFMESYCEV LHRYKEELSK PFDEATTFLS NIESQLSNLC KGALTKTLAT FTGPHMLCLT 180 DEAAGTSEEE LSGGEAEASE SQESAVARPC QDIKGMLMRK YSGYLSSLRK EFLKKRKKGK 240 LPKDARMALL EWWNNHYRWP YPTEEEKLQL SEITGLDQKQ INNWFINQRK RHWKPSEDMK 300 FALFEGVAGN AGGPMYLDAG VGTGSDNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	237	LRKEFLKKRK
2	234	238	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-72	TALE family protein