PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281436.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 450aa MW: 50478.4 Da PI: 9.6714

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.5e-07	130	171	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d+++++ + + Ia ++++ Rt +++k+r+++ XP_021281436.1 130 WTKEETDQLFDLCERFDLR-FIVIADRFPTFRTVEELKDRYYS 171 *****************.*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MDAKDILGLP KTPLPITQEK KPRPQKDSQR KPDGISREVY ALTGGLAPLM PSIDASQLKR 60 RPPSDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIKYTDEE 120 YEKYLTDPMW TKEETDQLFD LCERFDLRFI VIADRFPTFR TVEELKDRYY SVSRAILIAR 180 APSPGEVAGH PLVKEPYNVS QETERKRALS MVLSQTKQQE RKDAEVLAEA KRIAESRMAA 240 QGAEEPDLPV TSDIVPESVE RAIGHGDTIS PSSVQVPSAA VAPSTSIMAD NASTLTSLRM 300 LRVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC AEHLELRKEI 360 LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TPKRSHRAVD QDRTFVPDAI SFGGERAGKR 420 EQKRKGPGRV SETPSSPAHK RPRKMKASDL

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MDAKDILGLP KTPLPITQEK KPRPQKDSQR KPDGISREVY ALTGGLAPLM PSIDASQLKR  60
RPPSDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIKYTDEE  120
YEKYLTDPMW TKEETDQLFD LCERFDLRFI VIADRFPTFR TVEELKDRYY SVSRAILIAR  180
APSPGEVAGH PLVKEPYNVS QETERKRALS MVLSQTKQQE RKDAEVLAEA KRIAESRMAA  240
QGAEEPDLPV TSDIVPESVE RAIGHGDTIS PSSVQVPSAA VAPSTSIMAD NASTLTSLRM  300
LRVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC AEHLELRKEI  360
LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TPKRSHRAVD QDRTFVPDAI SFGGERAGKR  420
EQKRKGPGRV SETPSSPAHK RPRKMKASDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein