PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281395.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 421aa MW: 47621.9 Da PI: 4.6218

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteEde+l ++v+ G g+W++ ++ g+ R++k+c++rw +yl XP_021281395.1 14 KGRWTTEEDEILTKYVQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57.1	4.1e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+el++++++ lG++ W++Ia++++ gRt++++k++w+++l XP_021281395.1 67 RGNITAEEEELIINLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGRAPCCEKV GLKKGRWTTE EDEILTKYVQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TAEEEELIIN LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHSFR 120 RPSCQSLPVI LDMTKVGTAK RKGRRTSRWE MKKTKSYGTQ EVAGSSSQKT VENVFVNEVV 180 PLPXTPILEK ETLSTTAIED RMALDPYGED KERMIPVRPS PGQDTGEGML GSSEERERLV 240 SMSSSGEERT IENSMLCTSG NAETETDVAP FENIESGGML CFNDIMDNEL LEPNGDLTLR 300 EWGENKVTVN IEERENSGLL SPNQTAANNE EIESGNLTSN VDCGDLNSCS SITSCFVDEC 360 SIDNNLDWGW ERLVQGNELW DEKEYMPSWL WESEADGKGE RHKLEDKEFE RQNSLVAWLF 420 Y

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGRAPCCEKV GLKKGRWTTE EDEILTKYVQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TAEEEELIIN LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHSFR  120
RPSCQSLPVI LDMTKVGTAK RKGRRTSRWE MKKTKSYGTQ EVAGSSSQKT VENVFVNEVV  180
PLPXTPILEK ETLSTTAIED RMALDPYGED KERMIPVRPS PGQDTGEGML GSSEERERLV  240
SMSSSGEERT IENSMLCTSG NAETETDVAP FENIESGGML CFNDIMDNEL LEPNGDLTLR  300
EWGENKVTVN IEERENSGLL SPNQTAANNE EIESGNLTSN VDCGDLNSCS SITSCFVDEC  360
SIDNNLDWGW ERLVQGNELW DEKEYMPSWL WESEADGKGE RHKLEDKEFE RQNSLVAWLF  420
Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-76	MYB family protein