PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281365.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 1026aa MW: 112909 Da PI: 9.3963

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.5e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R++ +k XP_021281365.1 69 KRPRDLLNPKAVKYMQAVFSIKDAISKKESREISALFGVTVTQVRDFFASQRTRVRK 125 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1026 aa Download sequence
MDVLKENLAE VEIGNTVESL QNFIDLQREL FHSQIDQLQN IVITQCKLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE ISALFGVTVT QVRDFFASQR 120 TRVRKQVRLS REKAVRSNAC KEAGEGVVLS ESDAMIPVEP VPLNSVGPVN TEEAPSCITQ 180 DDALTGIDEL DKHFVENIFT KMRKEETFSG QVKLLEWILQ IQNPSVLYWF LTKGGVMILA 240 TWLSQAAVEE QTTVLFIILK VLCHLPLQKA LPEQMSAILQ SVNKLCLYRF SDISHRARLL 300 ISRWSKMFAR SQAVKKPNGL KSSTDAQNEL LLKQSISEIM GDEPWQSNVE NSEEIFATSN 360 VRKLESPQVL KLLPASMDDS TKKNILGVSG SHSRERRKVQ LVEQPGQKMA GKSSQTTRTV 420 PLSQSRPMSA DDIQKAKMRA LYMQSKYGKT GSSNGMNEAK SEGLNKPSNS QASFSPPVSK 480 VNVRPAEEQK KPVILPPKTP NRLGTSLDPK QNMDSKEPPW GNCQKVKIPW HTPPEVKLNE 540 LWRVGAGENS KEVDMQKNRN RRERETFYYT IQEIPSNPKE PWDREMDYDD TLTPEIPTEQ 600 PPDTDSTETQ VTHGEHVNSA AALAPSSSHI GGGVAAEPDL ELLAVLLKNP ALVFALTSGQ 660 AGNLTSEETV KLLDMIKAGG AGNSNNIGKN VEEKVEVSLP SPTPSSNPGT SGWKPEAVRN 720 PFSPQTQIGN RVAQASLGVG ATTPAAERLP ATSMAAPQQD ANGQLLAQQL AAAIAQLLPQ 780 SNAMTPEKRQ SPNVAFSHHG HPSNSPAMQP PASEIALTSK NKPIANSSST NLSAAAGPTL 840 RVETLTNVKP APISITPNAP EKLHSSFSMS TLMPTPSQPQ TAPHLRPQLP QVTDPPIHTH 900 PYSSRPPVGN IGPMSDPWRA RQSLASNPHS QANQTNYNAS VGGSVQPQSR SGPPWEGNEY 960 LGHEGFESWS PENSPNRSSE YVPGRNYQEP RMNSGWSYRP DRSWQRSTPG YRDQNRQGNR 1020 RWRDRR

Sequence ? help Back to Top

Protein Sequence Length: 1026 aa Download sequence

MDVLKENLAE VEIGNTVESL QNFIDLQREL FHSQIDQLQN IVITQCKLTG VNPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE ISALFGVTVT QVRDFFASQR  120
TRVRKQVRLS REKAVRSNAC KEAGEGVVLS ESDAMIPVEP VPLNSVGPVN TEEAPSCITQ  180
DDALTGIDEL DKHFVENIFT KMRKEETFSG QVKLLEWILQ IQNPSVLYWF LTKGGVMILA  240
TWLSQAAVEE QTTVLFIILK VLCHLPLQKA LPEQMSAILQ SVNKLCLYRF SDISHRARLL  300
ISRWSKMFAR SQAVKKPNGL KSSTDAQNEL LLKQSISEIM GDEPWQSNVE NSEEIFATSN  360
VRKLESPQVL KLLPASMDDS TKKNILGVSG SHSRERRKVQ LVEQPGQKMA GKSSQTTRTV  420
PLSQSRPMSA DDIQKAKMRA LYMQSKYGKT GSSNGMNEAK SEGLNKPSNS QASFSPPVSK  480
VNVRPAEEQK KPVILPPKTP NRLGTSLDPK QNMDSKEPPW GNCQKVKIPW HTPPEVKLNE  540
LWRVGAGENS KEVDMQKNRN RRERETFYYT IQEIPSNPKE PWDREMDYDD TLTPEIPTEQ  600
PPDTDSTETQ VTHGEHVNSA AALAPSSSHI GGGVAAEPDL ELLAVLLKNP ALVFALTSGQ  660
AGNLTSEETV KLLDMIKAGG AGNSNNIGKN VEEKVEVSLP SPTPSSNPGT SGWKPEAVRN  720
PFSPQTQIGN RVAQASLGVG ATTPAAERLP ATSMAAPQQD ANGQLLAQQL AAAIAQLLPQ  780
SNAMTPEKRQ SPNVAFSHHG HPSNSPAMQP PASEIALTSK NKPIANSSST NLSAAAGPTL  840
RVETLTNVKP APISITPNAP EKLHSSFSMS TLMPTPSQPQ TAPHLRPQLP QVTDPPIHTH  900
PYSSRPPVGN IGPMSDPWRA RQSLASNPHS QANQTNYNAS VGGSVQPQSR SGPPWEGNEY  960
LGHEGFESWS PENSPNRSSE YVPGRNYQEP RMNSGWSYRP DRSWQRSTPG YRDQNRQGNR  1020
RWRDRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein