PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281324.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 431aa MW: 47319.3 Da PI: 7.6971

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.5e-11	359	404	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l P+ k + a++L +AveYIk+Lq XP_021281324.1 359 SIAERVRRTRISERMRKLQGLFPNM----EKQTNTADMLDMAVEYIKDLQ 404 689*******************7....467***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MSVLYSSNFK FPDGELRKKQ EFTDSSYYLE QNHQHNSGLM RYRSAPGSFL ENLVNGSVTA 60 SATGFEDYRG VRSSTPEMET FFMVSCNGSG NSSCHDVQEY GEKSVKQEES QPISQQNGCS 120 NSSEIMYQSL PVHSLANDNT VSVANSMESS FGLSSSLGLE NSMQAKPGNE NGCNLVRQSS 180 SPAEFFSNLG VDNGFNVIGK ASTFRACDGT NDETTATGSG RLYNNHISFS SGPSSCSRHM 240 PRIPEVESES MGLSGPETGS LGNGNGSNGH FVSNLGTDSW NNASLSGLKR ARESDGDLFR 300 NLSRSQTQDY SDRSTALRHH LSLPRTCAEM AVVEKLWQFQ GSVPCKIRAK RGCATHPRSI 360 AERVRRTRIS ERMRKLQGLF PNMEKQTNTA DMLDMAVEYI KDLQKQVKTL TDAKAKCTCS 420 SKQKHYSNLS T

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MSVLYSSNFK FPDGELRKKQ EFTDSSYYLE QNHQHNSGLM RYRSAPGSFL ENLVNGSVTA  60
SATGFEDYRG VRSSTPEMET FFMVSCNGSG NSSCHDVQEY GEKSVKQEES QPISQQNGCS  120
NSSEIMYQSL PVHSLANDNT VSVANSMESS FGLSSSLGLE NSMQAKPGNE NGCNLVRQSS  180
SPAEFFSNLG VDNGFNVIGK ASTFRACDGT NDETTATGSG RLYNNHISFS SGPSSCSRHM  240
PRIPEVESES MGLSGPETGS LGNGNGSNGH FVSNLGTDSW NNASLSGLKR ARESDGDLFR  300
NLSRSQTQDY SDRSTALRHH LSLPRTCAEM AVVEKLWQFQ GSVPCKIRAK RGCATHPRSI  360
AERVRRTRIS ERMRKLQGLF PNMEKQTNTA DMLDMAVEYI KDLQKQVKTL TDAKAKCTCS  420
SKQKHYSNLS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-61	bHLH family protein