PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281312.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 605aa    MW: 68188.7 Da    PI: 5.9899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.42.1e-852225911374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsevsPilkf 93 
                     lv+lLl++Ae v  +++e+a++l++r + +as++++p+qR++  f+eAL++r+ + ++  ++k l+++ ++e ++  +++++++  ++  P++++
  XP_021281312.1 222 LVHLLLAAAEKVGYEQFERASRLVSRCEWIASERANPVQRVVYNFAEALRERIDKgTGRIISKELESKVKNEIDHGLSTNVTSVsVHQYIPFVQV 316
                     68*****************************************************77777888888888776664444455544799******** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++t  qaI e v++++++H+iD++i  G+QW  L+qaLa+R+      l+iT+v+    + ++++ee g+rL+++A++l++pf+f+v ++++++
  XP_021281312.1 317 MQFTGIQAIIENVASASKIHVIDLQIRSGVQWTGLMQALAEREqCRVELLKITAVEL---VGNQKIEESGKRLESVAASLNLPFSFRVTYVDDMK 408
                     *******************************************444569*******9...789******************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     d++ e +++ ++E+laV + l l +l++++ +le+    +++++k+l+P ++vv+e ea+hns+sF+ rf+eal +ysa+f+++++ l+++ e r
  XP_021281312.1 409 DIKEELFNIGSDESLAVYCPLVLRTLVSRPSCLEN----LMRVMKNLNPAIMVVIEVEANHNSPSFVSRFIEALFFYSAFFECIDTCLAHDVELR 499
                     **************************988888888....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k E + + + i+++va+eg+er++r  ++e W++ + ++ + ++ +s++   qa+l++++++     ++    +sl+ gWk+ p+ svSaW+
  XP_021281312.1 500 TKTESV-FCNGIRSIVAMEGNERIARSVKMEVWSAFFARFSMVELGFSDSSLYQANLVIKRFPcASSCTLARTGKSLIVGWKGTPVHSVSAWK 591
                     *****9.9*******************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    
MTSFHNSKMA SGLFSFSTPL DFNGIQGSYN LQDYEKEAAV IKGKEDHLFG VQEIGEERDY  60
DPLFPEYGLY DQENVAKKPV DQGEQQQQLG QATKLDYLVE FDFSSAFSTN LAFQEFPRQE  120
NIQELVKPIK EIPSSFYLSS LELLSNCGNS FKKLKMGKSS GTGNETNALG HNKLSTEEIM  180
RVAGARYVQF SDQRYDDFSM VMHPFGHALS GLSADETKDV ELVHLLLAAA EKVGYEQFER  240
ASRLVSRCEW IASERANPVQ RVVYNFAEAL RERIDKGTGR IISKELESKV KNEIDHGLST  300
NVTSVSVHQY IPFVQVMQFT GIQAIIENVA SASKIHVIDL QIRSGVQWTG LMQALAEREQ  360
CRVELLKITA VELVGNQKIE ESGKRLESVA ASLNLPFSFR VTYVDDMKDI KEELFNIGSD  420
ESLAVYCPLV LRTLVSRPSC LENLMRVMKN LNPAIMVVIE VEANHNSPSF VSRFIEALFF  480
YSAFFECIDT CLAHDVELRT KTESVFCNGI RSIVAMEGNE RIARSVKMEV WSAFFARFSM  540
VELGFSDSSL YQANLVIKRF PCASSCTLAR TGKSLIVGWK GTPVHSVSAW KFSRDRGRVF  600
AKYRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-49GRAS family protein