PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281184.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 668aa MW: 73208.9 Da PI: 5.3646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	489	534	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_021281184.1 489 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 534 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MTDYRLAPTM NLWTDDNASV MEAFMSSDLS ALWPPPQSSA STSAPAAAAG PTXSKSSLAQ 60 SQPSVSVLNQ ETLQQRLQAL IEAXRESWTY AIFWQSSYDY SGTAVLGWGD GYYKGEEDKG 120 KGKLKASSST AAEQDHRKKV LRELNSLISG STSPTDDAVD EEVTDTEWFF LVSMTQSFVN 180 GGGLPGQAFF NTSPVWVAGS DRLATSICER ARQGQAFGLQ TMVCIPSANG VVELGSTELI 240 TQSSDLMNKX RVLFNFNNGI EAGSWSMSNN TADQGENDPS SLWXSDPNNG IELKESNNNS 300 NNNNTSHQNQ QIQKSIQFCD NPSSSSLTEN PSSIHVEIIS SSRINSRAQF LLEFLDYXFD 360 GSSSVRNGNS SSHLLKPESG EILNFGESRR SGNGNLFSGN SQFGVEENKK KRSPNSRGSN 420 EEGMLSFTSG VILPSSAGVK SSGGAGDSDH SDLEASVVKE ADSSRVVEPE KRPRKRGRKP 480 ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELRTKLQN 540 ADSEKEELQK ELEAMKKELA SKDSRSAPPP PDQDLKMSNH LGNKLVELEI DVKIIGWDAM 600 IRIQCNKKNH PAARLMAALK ELDLDVHHAS VSVVNDLMIQ QATVKMGSRF YTQEQLRIAL 660 TSKFGDAR

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MTDYRLAPTM NLWTDDNASV MEAFMSSDLS ALWPPPQSSA STSAPAAAAG PTXSKSSLAQ  60
SQPSVSVLNQ ETLQQRLQAL IEAXRESWTY AIFWQSSYDY SGTAVLGWGD GYYKGEEDKG  120
KGKLKASSST AAEQDHRKKV LRELNSLISG STSPTDDAVD EEVTDTEWFF LVSMTQSFVN  180
GGGLPGQAFF NTSPVWVAGS DRLATSICER ARQGQAFGLQ TMVCIPSANG VVELGSTELI  240
TQSSDLMNKX RVLFNFNNGI EAGSWSMSNN TADQGENDPS SLWXSDPNNG IELKESNNNS  300
NNNNTSHQNQ QIQKSIQFCD NPSSSSLTEN PSSIHVEIIS SSRINSRAQF LLEFLDYXFD  360
GSSSVRNGNS SSHLLKPESG EILNFGESRR SGNGNLFSGN SQFGVEENKK KRSPNSRGSN  420
EEGMLSFTSG VILPSSAGVK SSGGAGDSDH SDLEASVVKE ADSSRVVEPE KRPRKRGRKP  480
ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELRTKLQN  540
ADSEKEELQK ELEAMKKELA SKDSRSAPPP PDQDLKMSNH LGNKLVELEI DVKIIGWDAM  600
IRIQCNKKNH PAARLMAALK ELDLDVHHAS VSVVNDLMIQ QATVKMGSRF YTQEQLRIAL  660
TSKFGDAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	479	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	4e-94	bHLH family protein