PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281149.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 345aa    MW: 37726.4 Da    PI: 9.1083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1374118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_021281149.1  74 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 118
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MVSVNPNPAQ GFYFFDPMNM GLPGVNTLPP ANTVAPPHPP PATSMSTSIA GNTAPYLEDP  60
SKKVRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL  120
KVQKNGTSEH VPPPRPKRKA SHPYPQKAPK SAPVVSQAAG PFQSSSALLE SGYTLRPDSA  180
SVVGNPIATA SLSSWSYNSV PTVTMSQVTK DDAVLAGPTI AHNACYSSSN ESTPRTWSFG  240
EAIDRGDHGQ KSRVIPDFAQ VYSFIGSVFD PSASGHLQKL KQMDPINLET VLLLMRNLSV  300
NLTSPEFEDH RRLLSSYDAE SESVKLDSSY KDVHTHKSAS AVPTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-112MYB_related family protein