PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021281143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 549aa MW: 61854.5 Da PI: 8.7519 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.6e-18 | 57 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l XP_021281143.1 57 KGGWTQEEDKMLTTAVQKFNGKNWKKIAECVP-DRTDVQCLHRWQKVL 103 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 8e-19 | 109 | 155 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel+ ++v++ G++ W+ Ia++++ gR +kqc++rw+++l XP_021281143.1 109 KGPWSKEEDELIFELVEKQGKKKWSEIAKYLP-GRIGKQCRERWFNHL 155 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.7 | 9.9e-17 | 162 | 203 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE++ l++a+ +G++ W+ Ia+ ++ gRt++++k++w+ XP_021281143.1 162 TAWTEEEELVLIRAHGTYGNR-WAEIAKLLP-GRTENSIKNHWN 203 68*******************.*********.***********8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 549 aa Download sequence |
MEEVKEDGDN TTTAIDDVND NINYESENLF VDHQICPDVS LYCLFRRISG PTRRSTKGGW 60 TQEEDKMLTT AVQKFNGKNW KKIAECVPDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDELI 120 FELVEKQGKK KWSEIAKYLP GRIGKQCRER WFNHLNPDIK KTAWTEEEEL VLIRAHGTYG 180 NRWAEIAKLL PGRTENSIKN HWNCSVKKKV ELLAASGINR GNHDRKVECM SFGLGKPLEQ 240 NVNQGRSTNP YSPQLVLGDT DGKESNLAIS NRGTCRVVRK DANGTMKPSS LTMFAKRYDD 300 GSDLAIKQHQ MHACDAQAPG HNYNLAANWS DRFRHASFGD LVKFPFLHER TTEHGFPPSP 360 LPLSTPLDAT IAADCDRKAA VPGFVERLYT SVRPQDRNTE NVELRLGCLS YESLQIKDLN 420 TFLTTGRLFP QTDSDVRMVS SPVFFNTPPV SRSCPETILR RAAKSFKNTP SIIRKRSSQS 480 TRQTSNHNES DGVGSNAKQL FLSPPKSPKL ETTAVTKSVE KRLEYVQDSS SSIPRASSTA 540 DHPSSTNST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.1 | 6e-87 | MYB family protein |