PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280807.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 373aa MW: 42191.1 Da PI: 6.6145

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.3e-07	11	45	2	36
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg 36 + r C+++++ ++ l+C+ ++ lC +C e H+ XP_021280807.1 11 QRRLCDHCNQSKALLYCRADSAKLCFSCDREVHSA 45 6789****99*******************54 PP
2	zf-B_box	24.5	5.5e-08	56	99	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 + C+ +++ +++fCe+ q+ +C +C e+Hk H+++p+ XP_021280807.1 56 QLCDACDKSSASIFCETEQSVFCSNCDWESHKCsssslHNRRPI 99 78****99*******************5577888888776 PP
3	CCT	62	2e-21	329	371	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeKrktR+++K+irYesRK++AesR R++GrF+k XP_021280807.1 329 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIRGRFAKV 371 899**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MTDQKNTNQK QRRLCDHCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFT RHLRSQLCDA 60 CDKSSASIFC ETEQSVFCSN CDWESHKCSS SSLHNRRPIE GFSGCPSVSE LVNSFGIEDL 120 GSKTLFLSEE KVGCGDGGED DGLLDLLSWE TPEFSSLDDL IVSSDFGHGF KPTDVPPLRK 180 NRNASCGRHK EEMLLQLREL AKSEPNLSTD FETITGFLPL LPNTYNLQPG NVHKSCKNDK 240 DPIPFPAFEL SAPQCFSDNV EMANQVFLPF SQFRGYTEES AVVPNEHLDT SRTTHVNDSL 300 EDQLQHQIAA GTTSALPKIA VHELNSQERD SAISRYKEKR KTRRYDKHIR YESRKVRAES 360 RTRIRGRFAK VEH

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MTDQKNTNQK QRRLCDHCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFT RHLRSQLCDA  60
CDKSSASIFC ETEQSVFCSN CDWESHKCSS SSLHNRRPIE GFSGCPSVSE LVNSFGIEDL  120
GSKTLFLSEE KVGCGDGGED DGLLDLLSWE TPEFSSLDDL IVSSDFGHGF KPTDVPPLRK  180
NRNASCGRHK EEMLLQLREL AKSEPNLSTD FETITGFLPL LPNTYNLQPG NVHKSCKNDK  240
DPIPFPAFEL SAPQCFSDNV EMANQVFLPF SQFRGYTEES AVVPNEHLDT SRTTHVNDSL  300
EDQLQHQIAA GTTSALPKIA VHELNSQERD SAISRYKEKR KTRRYDKHIR YESRKVRAES  360
RTRIRGRFAK VEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-100	CO-like family protein