PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280725.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 476aa MW: 51110.4 Da PI: 8.9183

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ XP_021280725.1 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75 57899********************96 PP
2	zf-CCCH	40.1	6e-13	94	120	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ XP_021280725.1 94 PGEPACQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP
3	zf-CCCH	36.6	7.4e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_021280725.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	36.5	8.3e-12	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_021280725.1 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323 5799*********************96 PP
5	zf-CCCH	36.3	9.4e-12	344	369	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++++G+Ck+G++CkF H++ XP_021280725.1 344 GVQPCSFYLQNGHCKFGSTCKFDHPM 369 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MELYGRNPGR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GTESYPERPG VPDCVYYMRT 60 GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK 120 HGGGSFSHVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY 180 QPVQSPSVPM PEQYGGASTS VRVARPPLLP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYSSVPSS TGPSSSNQKE QTFPERPGEP 300 ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG 360 STCKFDHPMG TMRYSPSASS LIDMPVAPYS VGSLLATLAP SSSSSELRPE LISGSKKDSY 420 LSRIPSSAST SSSSVGLIFS QTGSVPLSDL QLSSQSSVPL SSSRSTRQGG EVRRSN

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MELYGRNPGR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GTESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK  120
HGGGSFSHVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY  180
QPVQSPSVPM PEQYGGASTS VRVARPPLLP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYSSVPSS TGPSSSNQKE QTFPERPGEP  300
ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG  360
STCKFDHPMG TMRYSPSASS LIDMPVAPYS VGSLLATLAP SSSSSELRPE LISGSKKDSY  420
LSRIPSSAST SSSSVGLIFS QTGSVPLSDL QLSSQSSVPL SSSRSTRQGG EVRRSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein