PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280626.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 320aa    MW: 35229.7 Da    PI: 6.5007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+lv+++k++G g+W++ ++  g+ R++k+c++rw +yl
   XP_021280626.1 14 KGPWAPEEDEILVNYIKKHGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding482.9e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_021280626.1  67 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRTPCCDRK GLKKGPWAPE EDEILVNYIK KHGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TLEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLVCMG  120
LDPQTHEPFT PCGPTTAAPT SPATRHMAQW ESARLEAEAR LSRESLLFSS PPLGKPDSDY  180
FLRLWNSEVG ESFRKLNRED KTACQSPISQ ASSSTKCGSV SAVTIDICPN IAGSSTPASN  240
QIEDTACKSF KSCTEDPVDA SDSSCSNESE DSSDTALQLL LDFPINNDMS FLENVDAYAT  300
SAAMLTDTSF ISPSEGYLKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-121MYB family protein