PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280617.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 454aa MW: 51817.6 Da PI: 4.4289

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115	7.5e-36	5	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..lelee......vikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +GfrFhPtd e + + k+v +++ ++ vi+++ di+++ePw+Lp k + +++ wyfF++ + ky++++rknr+t++gyWk t XP_021280617.1 5 KGFRFHPTDAEAIEHLWDKRVLDRDsiVQ--VgdflvpVITHLeDICEFEPWELPGrsKSEPGDNLWYFFCSPKYKYRNSERKNRVTREGYWKPT 97 7**********8888888998886622..1346665788888*******5234455889************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 g+ e+l++ ++e g ++tLvfy + ++++ +kt+Wv+he+++ XP_021280617.1 98 GTPSEILTTynGQEIRGSRQTLVFYrgrvRDKKKNEKKTQWVIHEFEI 145 ***998778889*****555545778889*******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MNYVKGFRFH PTDAEAIEHL WDKRVLDRDS IVQVGDFLVP VITHLEDICE FEPWELPGRS 60 KSEPGDNLWY FFCSPKYKYR NSERKNRVTR EGYWKPTGTP SEILTTYNGQ EIRGSRQTLV 120 FYRGRVRDKK KNEKKTQWVI HEFEIPLNLP NQKRIALCRL KKKYGKVDVS RGEEGQSSHS 180 LPSNLENQAT NNAIPEDQLN SNAPLTESEA FNEYSGNQTT LTTNEQDDDE FVDSLINNDE 240 INTEQRSNQP FFVDENEGPK LPSNFLVHVA DDDIPNNQED FGGLVNQKPK ALNDCVETLN 300 SGRTSEHDNS SRSSIFIPND QTNSVGGGNQ QATLVAENER SSLAFENHVA ENSVPMEDSE 360 FDKCLLEGLF MAELSHAPEG VENDELSTNE QDDEFWNKIY FTTDEVLGSE QQNRTDSTMG 420 SPYDPCPMES SRKRPRIESE RLNRGEDIQA APSQ

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MNYVKGFRFH PTDAEAIEHL WDKRVLDRDS IVQVGDFLVP VITHLEDICE FEPWELPGRS  60
KSEPGDNLWY FFCSPKYKYR NSERKNRVTR EGYWKPTGTP SEILTTYNGQ EIRGSRQTLV  120
FYRGRVRDKK KNEKKTQWVI HEFEIPLNLP NQKRIALCRL KKKYGKVDVS RGEEGQSSHS  180
LPSNLENQAT NNAIPEDQLN SNAPLTESEA FNEYSGNQTT LTTNEQDDDE FVDSLINNDE  240
INTEQRSNQP FFVDENEGPK LPSNFLVHVA DDDIPNNQED FGGLVNQKPK ALNDCVETLN  300
SGRTSEHDNS SRSSIFIPND QTNSVGGGNQ QATLVAENER SSLAFENHVA ENSVPMEDSE  360
FDKCLLEGLF MAELSHAPEG VENDELSTNE QDDEFWNKIY FTTDEVLGSE QQNRTDSTMG  420
SPYDPCPMES SRKRPRIESE RLNRGEDIQA APSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-29	NAC family protein