PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280549.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 452aa MW: 49168.3 Da PI: 10.0924

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.5	1e-22	143	187	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC ++v++++k+C H+hrgr+rsrk++e+ XP_021280549.1 143 DPEPGRCRRTDGKKWRCGKNVIPDQKYCAQHMHRGRQRSRKPVES 187 79****************************************997 PP
2	WRC	65.3	8.8e-21	343	380	2	39
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 epgrCrRtDGKkWRCsr+v++++k+C rH+hrg ++ XP_021280549.1 343 LEPGRCRRTDGKKWRCSRDVIPDQKYCARHMHRGAKKH 380 59********************************6654 PP
3	QLQ	42.2	2.6e-15	75	109	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQl++L Q+l+y+y+a + PvP +L+++i+k XP_021280549.1 75 FTTAQLHELQLQALIYRYIAGGIPVPLHLVMPIWK 109 **********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSSMQAQPVQ SPLLPDSGGR GGGSGTPERS EDKGGSVKME EKEKRKEGSP SIRLGLGIDG 60 NTTEKPVVKH GKCVFTTAQL HELQLQALIY RYIAGGIPVP LHLVMPIWKS VASSGSAHGG 120 IYDQYPSFVG FSPQGLDYRS MMDPEPGRCR RTDGKKWRCG KNVIPDQKYC AQHMHRGRQR 180 SRKPVESSQI TLPDTTLSKG SNKESENSKS LSATVNAQYT NPSSCNTSTS HERTATTAVD 240 SNNMWSNRNS ISTNAITSTT VITATNNDEK NDCKRNKNFP KTSKKREEKV SVSDNIIINK 300 SSKSGNNATV GNRISPGVGF SPKSVLQVLG SKSSRGYQNE MELEPGRCRR TDGKKWRCSR 360 DVIPDQKYCA RHMHRGAKKH VEVSQPVAIP TIGPPSRLTI ANKAACAVLS TSLSISIPSP 420 HLITQEEKST SCSSETTISD TTITVFENGN VS

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSSMQAQPVQ SPLLPDSGGR GGGSGTPERS EDKGGSVKME EKEKRKEGSP SIRLGLGIDG  60
NTTEKPVVKH GKCVFTTAQL HELQLQALIY RYIAGGIPVP LHLVMPIWKS VASSGSAHGG  120
IYDQYPSFVG FSPQGLDYRS MMDPEPGRCR RTDGKKWRCG KNVIPDQKYC AQHMHRGRQR  180
SRKPVESSQI TLPDTTLSKG SNKESENSKS LSATVNAQYT NPSSCNTSTS HERTATTAVD  240
SNNMWSNRNS ISTNAITSTT VITATNNDEK NDCKRNKNFP KTSKKREEKV SVSDNIIINK  300
SSKSGNNATV GNRISPGVGF SPKSVLQVLG SKSSRGYQNE MELEPGRCRR TDGKKWRCSR  360
DVIPDQKYCA RHMHRGAKKH VEVSQPVAIP TIGPPSRLTI ANKAACAVLS TSLSISIPSP  420
HLITQEEKST SCSSETTISD TTITVFENGN VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-32	GRF family protein