PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280519.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 566aa MW: 61915.2 Da PI: 8.7866

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_021280519.1 91 FVCEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	12.9	0.00032	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C k + +s+ k H++t+ XP_021280519.1 167 WKCDKCAKKYAVQSDWKAHQKTC 189 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MSNISGDDRS FSSGNTGEEV QQLEEKQQKQ QLQNNFPGSG SGPSGASNSN GSASQQPHQP 60 VKKKRNLPGT PDPNAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR 120 QRTTTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCAKKYAVQS 180 DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGLM NHMGSNLQNQ 240 MPELMSSMPM SNANTSMGIS DFNNFDPKNQ LKSLPQELVP MPFKSMNMGG GMFSSSSGTL 300 FGGPRSISSA SSSLQLSSNS SSGFNYLQDS KNGCHIAGSP NMSATALLQK AAQMGATASN 360 SINSPMMQKS FATSVAGTDQ SIRPLSFGGI QQQNTSYDHF PSQTDQSSMA GISEGGFSNP 420 LMQKSPNEMT QLFNAVTGSS ANLNDMGMYA SLFINGADRN QSLMKNMEHE DSGSTSLLQG 480 RTRAMERSPT GPSIFVASSS GGCNMTTLDF MGIGGSRQQA NLHEEQHQHQ RLELEAISQQ 540 RLPMINPFQQ QLSHGDSAIE KPIWDV

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MSNISGDDRS FSSGNTGEEV QQLEEKQQKQ QLQNNFPGSG SGPSGASNSN GSASQQPHQP  60
VKKKRNLPGT PDPNAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR  120
QRTTTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCAKKYAVQS  180
DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGLM NHMGSNLQNQ  240
MPELMSSMPM SNANTSMGIS DFNNFDPKNQ LKSLPQELVP MPFKSMNMGG GMFSSSSGTL  300
FGGPRSISSA SSSLQLSSNS SSGFNYLQDS KNGCHIAGSP NMSATALLQK AAQMGATASN  360
SINSPMMQKS FATSVAGTDQ SIRPLSFGGI QQQNTSYDHF PSQTDQSSMA GISEGGFSNP  420
LMQKSPNEMT QLFNAVTGSS ANLNDMGMYA SLFINGADRN QSLMKNMEHE DSGSTSLLQG  480
RTRAMERSPT GPSIFVASSS GGCNMTTLDF MGIGGSRQQA NLHEEQHQHQ RLELEAISQQ  540
RLPMINPFQQ QLSHGDSAIE KPIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-100	C2H2 family protein