PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280385.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 376aa MW: 41577.7 Da PI: 9.8262

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.4	1.4e-21	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++ r+ ++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a XP_021280385.1 56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVaRRCPLampPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFTSSWVHFKRMDA 147 7***********************************53334433589*********************97799*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MSNPSSPSPQ RDPPSNTSPP PPSELPLALP APPAATSTPP TATIVTPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVARRCPLA MPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFTSSWV HFKRMDAMEK GPNVKPDYNS DSPDEENDED DEEDQDHDFY 180 EDGYKNGSVN TRSVQKLYRN GIGNSGGSVS GSGGAGGSSG GFRIRIPTGV SIAQPGPRYY 240 GKLDQKYGAS PNSNPNPNAN PHPNKGNFSV SGSGSGYGTR VLRGFEETPG KTAASGKRER 300 DAVAEMVAAI KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA 360 VSERKKKPKR MPSPES

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MSNPSSPSPQ RDPPSNTSPP PPSELPLALP APPAATSTPP TATIVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVARRCPLA MPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFTSSWV HFKRMDAMEK GPNVKPDYNS DSPDEENDED DEEDQDHDFY  180
EDGYKNGSVN TRSVQKLYRN GIGNSGGSVS GSGGAGGSSG GFRIRIPTGV SIAQPGPRYY  240
GKLDQKYGAS PNSNPNPNAN PHPNKGNFSV SGSGSGYGTR VLRGFEETPG KTAASGKRER  300
DAVAEMVAAI KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA  360
VSERKKKPKR MPSPES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-79	Trihelix family protein