PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280377.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 287aa MW: 32339.3 Da PI: 8.6622

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl XP_021280377.1 14 RGPWTPREDTLLVKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.5	5.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l XP_021280377.1 67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGRAPCCSKV GLHRGPWTPR EDTLLVKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG 120 TDPNTHKKLS EPAVQQVKKR KSSRGSSNKK QNNSKAKGAK VEPEKPKVHL PKPIRVTSFS 180 LPRNDSFDQC NTFSTVSSCQ EGEGRLGTEV VQGPWSDNVN DDENGTGFLA AYDDHGFVNG 240 SDFECQSHVL ASDDDNSLEK LYEEYLQLLK TNDDQVQLDS FAESLLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	167	KKRKSSRGSSNKKQNNSKAKGAKVEPEKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-71	MYB family protein