PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280336.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 390aa MW: 44252.9 Da PI: 5.7097

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	201	252	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ XP_021280336.1 201 QRMTHIAVERNRRRQMNDYLNSLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 252 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MERLQGPINP CFLEEHLEVE CLEEGFVNSQ SLRFGEEEEE AHFSIPSLED KMPFLQMLQS 60 VQSPQLFAFK EPNFQTLLRL QHLKKPWEIN NNPFIPEMET QIQALELESC VTHEIFDLQS 120 PVKSETQDLK KNPRSISCFE VVSAESNQDQ PKSATADNCS REGNSGSSPP KNFTKSPPIT 180 RERRKRKRTR PAKNKEEVES QRMTHIAVER NRRRQMNDYL NSLRSLMPPS YIQRGDQASI 240 IGGAIDFVKE LEQLLQSLEA QKRMRRIEES SNSNKSVAKS AMEISQSETG VGSEDANCGE 300 EVKAESKSGV AEIEVNVIHN HVNLKIQCSR RPGQLLQAIV TLESLRLTVL HLNITSSQAS 360 ILYSFNLKME DDCKLRSADE IAAAVHQIFS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MERLQGPINP CFLEEHLEVE CLEEGFVNSQ SLRFGEEEEE AHFSIPSLED KMPFLQMLQS  60
VQSPQLFAFK EPNFQTLLRL QHLKKPWEIN NNPFIPEMET QIQALELESC VTHEIFDLQS  120
PVKSETQDLK KNPRSISCFE VVSAESNQDQ PKSATADNCS REGNSGSSPP KNFTKSPPIT  180
RERRKRKRTR PAKNKEEVES QRMTHIAVER NRRRQMNDYL NSLRSLMPPS YIQRGDQASI  240
IGGAIDFVKE LEQLLQSLEA QKRMRRIEES SNSNKSVAKS AMEISQSETG VGSEDANCGE  300
EVKAESKSGV AEIEVNVIHN HVNLKIQCSR RPGQLLQAIV TLESLRLTVL HLNITSSQAS  360
ILYSFNLKME DDCKLRSADE IAAAVHQIFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	RRKRKR
2	202	213	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	5e-84	bHLH family protein