PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280323.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 229aa MW: 26042.7 Da PI: 9.3847

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.3	7.3e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_021280323.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	75.5	1.4e-25	81	158	10	87
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 e++++s++qe++kLk+++e+Lqr+qRhllGedL++L++keLq+Le+qLe +l R++K++ l + ++l+ + ++ XP_021280323.1 81 LERETQSWYQEVTKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALALARQRKERQLGDLNKQLKLRLEAE 158 46779*************************************************************999999887654 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GMTKTLERYQ RCCFTPQDNS LERETQSWYQ EVTKLKAKYE SLQRTQRHLL GEDLGPLNVK 120 ELQNLEKQLE GALALARQRK ERQLGDLNKQ LKLRLEAEGQ SLKTIQGLWS SSAAAENSSF 180 PLHPSHANPM ECDPEPVLQI GYHHFVQAEG SSVPKSMAGE TNFIHGWVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-113	MIKC_MADS family protein