PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021280322.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27787.8 Da PI: 9.3686 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.2 | 8e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ XP_021280322.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 99.4 | 5.1e-33 | 81 | 170 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e++++s++qe++kLk+++e+Lqr+qRhllGedL++L++keLq+Le+qLe +l R++K+++++eq+e+l+kke++l + nk+L+ +le XP_021280322.1 81 LERETQSWYQEVTKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERQLGDLNKQLKLRLE 170 46779********************************************************************************98776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GMTKTLERYQ RCCFTPQDNS LERETQSWYQ EVTKLKAKYE SLQRTQRHLL GEDLGPLNVK 120 ELQNLEKQLE GALALARQRK TQIMIEQMED LRKKERQLGD LNKQLKLRLE AEGQSLKTIQ 180 GLWSSSAAAE NSSFPLHPSH ANPMECDPEP VLQIGYHHFV QAEGSSVPKS MAGETNFIHG 240 WVI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-126 | MIKC_MADS family protein |