PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280306.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 319aa    MW: 36012.3 Da    PI: 6.105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_021280306.1 22 KGLWSPEEDEKLMKYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding52.61.1e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++ 
   XP_021280306.1  75 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 119
                      89********************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MRKPDQNMGK DRVNNNKIKL RKGLWSPEED EKLMKYMLTN GQGCWSDIAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEELIIHLH SILGNRWSQI AARLPGRTDN EIKNFWNSTL  120
KKRLKNNTST SSSPNNSDSS EPRDHGVGGI FPVHEHDIMT LCMDSSSSSS TSMRPIVTGK  180
QFDPFPLLNN RYDMTGAPCL FDVPACLTQG GMGEGLYGDY GVLEPANKIG LEGDFSLPPL  240
ESRSIEENNA ANASIDMKSN NNHYNNTCFN NTDQSFKVGD IFGLENHHWQ GENLRMGEWD  300
LEGLMDNISS FPFLDFQVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-91MYB family protein