PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280302.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 298aa MW: 33459.7 Da PI: 8.732

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d++k G g W++I++ g++R++k+c++rw++yl XP_021280302.1 15 RGAWTATEDKILIDYIKARGEGKWRSIPKAAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	50.4	5.2e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++ XP_021280302.1 68 RGNITRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSV 112 7899****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGRQPCCSKV EGLNRGAWTA TEDKILIDYI KARGEGKWRS IPKAAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITRDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SVLSKRAQVK 120 KFDHTNKDEK KQRFISWSKK APTSSGVIQP KAGRCTKVFT TPQQQVIGRH ENNNIARTAP 180 SADAKLVHET AVESGCSDGS FTLLSSKEEN PSISKFAMDF DIGDINIYEA LPSDFSQLSD 240 FEFRDINTVI YEDGTNDCRQ ALWSSEGMAG NWSGNDCVEA NLDSDFGFLA AFRGSAEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	5e-61	MYB family protein