PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280279.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 388aa MW: 43858.6 Da PI: 6.6972

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.6	8.2e-52	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++++k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_021280279.1 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQERCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 108 69**************************.9***********964444122455******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s + + +g++ktLvfykgrap+g+k+dW+mheyrl XP_021280279.1 109 YS-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 .8889***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QERCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NCRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNIVEA NVSNAMGEGT QEEGWVVCRI FKKKNHHKTL 180 DSPVSSSLTA ETRNLMFSSS NEGALEQILE YMGRNCKEDS EANNNTRFLR PIETAISSGY 240 PDSFMKLPSL ESPNSTSSQN CYQPMITGNE GSITNQLSGD PNSVYHNDSG LTNWAALDRL 300 VASQLNGQTE TSRQLACFND HNMAYCSATD HHDLQLPALR SSSISSSRSY HGTHQDYNSE 360 IDLWSFTRSS SSSLSSSDPL CHVVNASV

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI  60
QERCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NCRRIGMRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNIVEA NVSNAMGEGT QEEGWVVCRI FKKKNHHKTL  180
DSPVSSSLTA ETRNLMFSSS NEGALEQILE YMGRNCKEDS EANNNTRFLR PIETAISSGY  240
PDSFMKLPSL ESPNSTSSQN CYQPMITGNE GSITNQLSGD PNSVYHNDSG LTNWAALDRL  300
VASQLNGQTE TSRQLACFND HNMAYCSATD HHDLQLPALR SSSISSSRSY HGTHQDYNSE  360
IDLWSFTRSS SSSLSSSDPL CHVVNASV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-135	NAC family protein