PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280235.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 614aa MW: 68297.5 Da PI: 6.6378

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	445	491	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq XP_021280235.1 445 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 491 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MKIEVGMGGG AWNDEDKTMV AAVLGTRAFD YLITSSVSNE NLLMTINSDE TLQNKLSDLV 60 DRPNASNFSW NYAIFWQISR SKSSDWVLGW GDGCCREPKE GEESEATRIL NLRLEDETQQ 120 KMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH 180 VWISDSLKSG SDYCVRSFLT KSAGVQTIVL VPTDVGVVEL GSVRSVPESL ELLQSIRSSF 240 SSNSALLRAK QMAVAIPVMN EKKDENTHFS NLGALERVEG IPKIFGQDLN NTSHGHSNYR 300 EKLAIRKMED RPTWGAYANG GRLSFSSNQN GLHASGWPHV HGVKQVNPTE FYGSQNTPNN 360 FQELVNGARE DFRVNQFQSQ KPVQMQIDFS GATSRPSTVN RPLSAESEHS DVEASCKEEK 420 PSVADERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL 480 GDAIAYINEL QAKLKVMEAE REKFGSTSRD SAGLDPNPTV ENHMRAPDID VQAAHNEVVV 540 RVSCPLDSHP ASRVIQAFKE AQIDVVESKL VTADDTVFHT FVIKSQGSEQ LTRERLIAAF 600 SRESSSLQSL SSLG

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MKIEVGMGGG AWNDEDKTMV AAVLGTRAFD YLITSSVSNE NLLMTINSDE TLQNKLSDLV  60
DRPNASNFSW NYAIFWQISR SKSSDWVLGW GDGCCREPKE GEESEATRIL NLRLEDETQQ  120
KMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH  180
VWISDSLKSG SDYCVRSFLT KSAGVQTIVL VPTDVGVVEL GSVRSVPESL ELLQSIRSSF  240
SSNSALLRAK QMAVAIPVMN EKKDENTHFS NLGALERVEG IPKIFGQDLN NTSHGHSNYR  300
EKLAIRKMED RPTWGAYANG GRLSFSSNQN GLHASGWPHV HGVKQVNPTE FYGSQNTPNN  360
FQELVNGARE DFRVNQFQSQ KPVQMQIDFS GATSRPSTVN RPLSAESEHS DVEASCKEEK  420
PSVADERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL  480
GDAIAYINEL QAKLKVMEAE REKFGSTSRD SAGLDPNPTV ENHMRAPDID VQAAHNEVVV  540
RVSCPLDSHP ASRVIQAFKE AQIDVVESKL VTADDTVFHT FVIKSQGSEQ LTRERLIAAF  600
SRESSSLQSL SSLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	435	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein