PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280152.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 365aa MW: 41359 Da PI: 5.4977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C ksF + L H+r+H XP_021280152.1 4 YKCKLCLKSFVNGKALGGHMRSH 26 9*********************9 PP
2	zf-C2H2	14.1	0.00014	233	255	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_021280152.1 233 YRCETCNKVFKSYQALGGHRASH 255 9************9999998887 PP
3	zf-C2H2	11.4	0.00099	286	308	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_021280152.1 286 HECPVCFRVFSSGQALGGHKRSH 308 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MEKYKCKLCL KSFVNGKALG GHMRSHMLHF PVPPKVEEQE RLEVAQNQPS EESEAASASF 60 SSSEEEGEDK GQFYGLRENP KRSIRLVDPE FVDAGSVVLQ DRESETESYK NPTRRRSKRT 120 RKMLEHHQYH HQQQESQELQ EETIKKLKVN NNQLSKTESW AEPEPVSSIS DTTTEEDVAF 180 CLMMLSRDQW KSKVHQDDDE EEETEIAKSM EETDESEEYF KISKVNRTTR GKYRCETCNK 240 VFKSYQALGG HRASHKKIKA CSPATHETEL EPENVGACSV TEKKIHECPV CFRVFSSGQA 300 LGGHKRSHVT GQVVATTEST PVKSSKKLGD NLIDLNLPAP MDEDDVSQIE LSAVSDAEFV 360 VCNNV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MEKYKCKLCL KSFVNGKALG GHMRSHMLHF PVPPKVEEQE RLEVAQNQPS EESEAASASF  60
SSSEEEGEDK GQFYGLRENP KRSIRLVDPE FVDAGSVVLQ DRESETESYK NPTRRRSKRT  120
RKMLEHHQYH HQQQESQELQ EETIKKLKVN NNQLSKTESW AEPEPVSSIS DTTTEEDVAF  180
CLMMLSRDQW KSKVHQDDDE EEETEIAKSM EETDESEEYF KISKVNRTTR GKYRCETCNK  240
VFKSYQALGG HRASHKKIKA CSPATHETEL EPENVGACSV TEKKIHECPV CFRVFSSGQA  300
LGGHKRSHVT GQVVATTEST PVKSSKKLGD NLIDLNLPAP MDEDDVSQIE LSAVSDAEFV  360
VCNNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	148	RRSKRTRKMLEHHQYHHQQQESQELQEETIKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-73	C2H2 family protein