PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279945.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 303aa    MW: 31831.1 Da    PI: 6.2587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.8e-10152196554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  XP_021279945.1 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 196
                     99***********************55......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MANNPNEAPA DDFLEQILGL PNFAPTETGL PGPDGSLAGT AAAAGAPMLL QLSSGDGAGH  60
LAAIGGGGGG AFHGQVFPLG LSLEQGKGGF LKPEEASGSG KRFRDDVVDG RASSVKNVFH  120
GQPMQATVAA APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT  180
DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPLSSVEDES GEGGRNQPAW  240
EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA TAIYHTQPPD TSSIVKPEAN  300
PPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-120bHLH family protein