PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279676.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 352aa MW: 40994.8 Da PI: 4.528

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111	1.4e-34	14	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rFhP+d+el+++yL +k+ +++ + ++i e+ d++++eP++Lp +++++ wy F++r+ + kr +r+tk g+Wk tg++++++ XP_021279676.1 14 VGYRFHPSDKELIDHYLWNKALDRDSAV-QAIGEItgDLCDYEPERLPgFsVRRSNDQVWYLFCRRHYN----KRVKRTTKLGFWKLTGRHRQIK 103 7**********************888.779888889******64334457779999764....59***************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g+kktLvfy+gr +kg+ t Wv+hey+l XP_021279676.1 104 A--NVGIGTKKTLVFYEGRVSKGKWTPWVIHEYSL 136 9..778*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MSDEMSRCSC NDIVGYRFHP SDKELIDHYL WNKALDRDSA VQAIGEITGD LCDYEPERLP 60 GFSVRRSNDQ VWYLFCRRHY NKRVKRTTKL GFWKLTGRHR QIKANVGIGT KKTLVFYEGR 120 VSKGKWTPWV IHEYSLPDTL PNQVSSSMLT LNYKGYFLCK LKRKEDEKAG IPSGEEGQPS 180 NVADDKIFDN SREINIDELL AQLEDTNDSN KVEDEVASAQ KLQMYGDFDE VQNQSNTNEQ 240 DDEFYLVSST QQSQIHEEHV PFYNDFTNFC GSNGNFRKVQ NQSSTNEQDD EFYRVSPTRQ 300 SQICEEYVPS YDNSTNFCSF NDNFHEVQNQ SSTNEQDDEF WKNIFIDNED DA

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MSDEMSRCSC NDIVGYRFHP SDKELIDHYL WNKALDRDSA VQAIGEITGD LCDYEPERLP  60
GFSVRRSNDQ VWYLFCRRHY NKRVKRTTKL GFWKLTGRHR QIKANVGIGT KKTLVFYEGR  120
VSKGKWTPWV IHEYSLPDTL PNQVSSSMLT LNYKGYFLCK LKRKEDEKAG IPSGEEGQPS  180
NVADDKIFDN SREINIDELL AQLEDTNDSN KVEDEVASAQ KLQMYGDFDE VQNQSNTNEQ  240
DDEFYLVSST QQSQIHEEHV PFYNDFTNFC GSNGNFRKVQ NQSSTNEQDD EFYRVSPTRQ  300
SQICEEYVPS YDNSTNFCSF NDNFHEVQNQ SSTNEQDDEF WKNIFIDNED DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	8e-41	NAC family protein