PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279608.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 817aa    MW: 88828.6 Da    PI: 6.084
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-21114169156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_021279608.1 114 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 169
                     688999***********************************************999 PP
2START211.53.1e-663235471206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+W +s     e++n de+l++f++  +     + +ea+r++gvv+ ++  lve+l+d+  +W e+++    + +t+
  XP_021279608.1 323 ELALAAMDELVKMAQTDEPLWIRSLeggrEILNHDEYLRTFTPCIGlkpggFVTEASRETGVVIINSLALVETLMDST-RWAEMFPcmiaRTSTT 416
                     5899**************************************9999*9******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +v +++lpSg+++++++ng+skvtwveh+
  XP_021279608.1 417 DVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHA 511
                     ************************************************************999******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h+l+r+l++sg+ +ga++wvatlqrqce+
  XP_021279608.1 512 EYEESQVHQLYRPLLNSGMGFGAQRWVATLQRQCEC 547
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    
MSFGGFLDNS SGGGGARIVA DIPYSNNMPT GAIAQPRLVS PSLAKNMFNS PGLSLALQQP  60
NIDNQGDGTR MGENFEVSVG RRSREEEHES RSGSDNMDGA SGDDQDAADN PPRKKRYHRH  120
TPQQIQELEA LFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT QLERHENSLL  180
RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ HLRIENARLK DELDRVCALA  240
GKFLGRPISA LATSIAPPMP NSSLELGVGS NGFGGLSTVP TTLPLGPDFG GGITNALPVA  300
PPNRPTTGVT GLDRSVERSM FLELALAAMD ELVKMAQTDE PLWIRSLEGG REILNHDEYL  360
RTFTPCIGLK PGGFVTEASR ETGVVIINSL ALVETLMDST RWAEMFPCMI ARTSTTDVIS  420
SGMGGTRNGA LQLMHAELQV LSPLVPVREV NFLRFCKQHA EGVWAVVDVS IDTIRETSGA  480
PTFVNCRRLP SGCVVQDMPN GYSKVTWVEH AEYEESQVHQ LYRPLLNSGM GFGAQRWVAT  540
LQRQCECLAI LMSSTVSTRD HTAITASGRR SMLKLAQRMT DNFCAGVCAS TLHKWNKLNA  600
GNVDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG  660
GPMQEMAHIA KGQDHGNCVS LLRASAMNAS QSSMLILQET CIDAAGSLVV YAPVDIPAMH  720
VVMNGGDSAY VALLPSGFAI VPDGPGSRGP XSNGHVNGNG GGGWRVAESG WVPSTVAFQI  780
LVNSLPTAKL TVESVETVNN LISCTVQKIK AALQCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein