PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279486.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 600aa MW: 65410.2 Da PI: 7.821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.4e-16	419	466	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRd+iN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_021279486.1 419 EVHNLSERRRRDKINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 466 57***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MAEEASESIP PRMPNHLPNL ASMYCDPEIL ELVWEXGEIL IEVVVQDTKE SRFPLRYFSQ 60 TSTAXIQREE ATSTGKXIKA GAATTFGDPL SGLSGLTKGS SSIRIRXTLE AGYAXHLSEL 120 YEDXYNVVLE PNKKCYDKEL IDSHIVPVNK FKSFKQSYMS KLVEEIPQHT MNSDSVVPQS 180 SFKQSEASVP FMRSKEQNPG NDEKRDKVNF SIFLRSPALF KSTHRSSGAT RPTSSSPGLA 240 GADEAILEGN VRSEDLKGNV GPAPRTSNPV DNMILVEPTN GXKYITSIEK EGHSLASNMK 300 PILPDSEPXN DSLLXQSEAV GNKHTPLNTR FPSKVRSLSS NLAPNTYIKG NPGNGKPIEQ 360 MVASSSVCSL GASNCPTYTL KRRYEDSDLS ENAMDEPEGT TKAVPSRGSK GAKRKRKAEV 420 HNLSERRRRD KINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKTLQFQVQ MMSMGTGAYM 480 PPIMLPTAMQ QINAQHWPGY SPMAVGMGMR MQMGLGCSPE QLPTTFLLSG AAAALPGITT 540 EARLNMLGFP GQVLLMSMSR SPFVSVQAPA GVSQPPAAQV ELAGAAISLS TPKGPNPTCH

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MAEEASESIP PRMPNHLPNL ASMYCDPEIL ELVWEXGEIL IEVVVQDTKE SRFPLRYFSQ  60
TSTAXIQREE ATSTGKXIKA GAATTFGDPL SGLSGLTKGS SSIRIRXTLE AGYAXHLSEL  120
YEDXYNVVLE PNKKCYDKEL IDSHIVPVNK FKSFKQSYMS KLVEEIPQHT MNSDSVVPQS  180
SFKQSEASVP FMRSKEQNPG NDEKRDKVNF SIFLRSPALF KSTHRSSGAT RPTSSSPGLA  240
GADEAILEGN VRSEDLKGNV GPAPRTSNPV DNMILVEPTN GXKYITSIEK EGHSLASNMK  300
PILPDSEPXN DSLLXQSEAV GNKHTPLNTR FPSKVRSLSS NLAPNTYIKG NPGNGKPIEQ  360
MVASSSVCSL GASNCPTYTL KRRYEDSDLS ENAMDEPEGT TKAVPSRGSK GAKRKRKAEV  420
HNLSERRRRD KINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKTLQFQVQ MMSMGTGAYM  480
PPIMLPTAMQ QINAQHWPGY SPMAVGMGMR MQMGLGCSPE QLPTTFLLSG AAAALPGITT  540
EARLNMLGFP GQVLLMSMSR SPFVSVQAPA GVSQPPAAQV ELAGAAISLS TPKGPNPTCH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	413	429	KRKRKAEVHNLSERRRR
2	414	430	KRKRKAEVHNLSERRRR
3	415	431	KRKRKAEVHNLSERRRR
4	425	430	ERRRRD
5	426	431	RRRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-36	bHLH family protein