PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279241.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

RAV

Protein Properties

Length: 357aa MW: 41106.3 Da PI: 7.2608

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.2	9.5e-09	48	93	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +kGV ++g W A+I+ + +r++lg+f +++eAa ++ a+ kl+ XP_021279241.1 48 FKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMSYDSAAIKLR 93 78885.556899**999......44******99**********98 PP
2	B3	89.2	3.2e-28	171	265	1	83
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+pkk+a ++ g+ e+++l+++d+ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D+++F+ XP_021279241.1 171 FQKELTPSDVGKLNRLVIPKKYAVKYfpyirendeenvAGVGVEEMELVFYDRLMRTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKERDIITFH 265 99**************************9776666633444999**********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDEDESSMVS NAKLKVAPAE TSNCGNSNYP LRASKRSRHE TNASLARFKG VVPQQNGHWG 60 AQIYANHQRI WLGTFKSEKE AAMSYDSAAI KLRSGDSHRN FPWAEHNIQE PLFQSLYSTE 120 DVLNMIRDGS YQAKFAEFVN ILSERDGLLG SKSVNKNMVH GDIHFSCVQL FQKELTPSDV 180 GKLNRLVIPK KYAVKYFPYI RENDEENVAG VGVEEMELVF YDRLMRTWKF RYCYWRSSQS 240 FVFTRGWNRF VKEKKLKERD IITFHTCHCP ALVEKDALNF FLIDVNYNGE QRCINEDKVS 300 NGLESSPQDL QVELGLNFYC RIDNCNSLFN EDKGLSGLKS SHDVEEKRVT LFGVQIN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDEDESSMVS NAKLKVAPAE TSNCGNSNYP LRASKRSRHE TNASLARFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKSEKE AAMSYDSAAI KLRSGDSHRN FPWAEHNIQE PLFQSLYSTE  120
DVLNMIRDGS YQAKFAEFVN ILSERDGLLG SKSVNKNMVH GDIHFSCVQL FQKELTPSDV  180
GKLNRLVIPK KYAVKYFPYI RENDEENVAG VGVEEMELVF YDRLMRTWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKERD IITFHTCHCP ALVEKDALNF FLIDVNYNGE QRCINEDKVS  300
NGLESSPQDL QVELGLNFYC RIDNCNSLFN EDKGLSGLKS SHDVEEKRVT LFGVQIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-112	RAV family protein