PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279229.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 363aa MW: 41209.8 Da PI: 5.7111

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.2	2.9e-48	58	183	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ppG+rF P deelv +yLkkkv++++l+ + i ev++y+++P++L +k+k+ +ekewyfF++rdkky++g+r+nra+ +gyWkatg d++++ XP_021279229.1 58 PPGYRFCPLDEELVLHYLKKKVKNEPLPH-NRIVEVNLYNHNPETLAEKYKQyGEKEWYFFTPRDKKYRNGTRPNRAAGDGYWKATGADRQIIY- 150 9***********************999.77**********9544443889**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg +k Lvfykg+ pkg kt+W+mheyr+ XP_021279229.1 151 TGHTVGFRKALVFYKGKPPKGDKTNWIMHEYRV 183 999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
METDEKPKPT LQSLVTKQLR PLNESSSGAT TVEVAKKEDS IKDSEENGDG DEYLDSFPPG 60 YRFCPLDEEL VLHYLKKKVK NEPLPHNRIV EVNLYNHNPE TLAEKYKQYG EKEWYFFTPR 120 DKKYRNGTRP NRAAGDGYWK ATGADRQIIY TGHTVGFRKA LVFYKGKPPK GDKTNWIMHE 180 YRVNDPPSCK RVYNDMRLDD WVLCRIYKKV DKSISRTRSK GNNQSPLIDN DDTNELMNMD 240 FDYNGGADSM DYSNALGSFM HQSLSDGSYN NLQPVSDQFQ TLTLSYGAHS KIVDSQSLRS 300 LSLKYPNDKG AQDDIWSVLN LDLASQLELY GVTCVEPLIN LDNIFSVDAS NNSSANAKTD 360 GTG

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

METDEKPKPT LQSLVTKQLR PLNESSSGAT TVEVAKKEDS IKDSEENGDG DEYLDSFPPG  60
YRFCPLDEEL VLHYLKKKVK NEPLPHNRIV EVNLYNHNPE TLAEKYKQYG EKEWYFFTPR  120
DKKYRNGTRP NRAAGDGYWK ATGADRQIIY TGHTVGFRKA LVFYKGKPPK GDKTNWIMHE  180
YRVNDPPSCK RVYNDMRLDD WVLCRIYKKV DKSISRTRSK GNNQSPLIDN DDTNELMNMD  240
FDYNGGADSM DYSNALGSFM HQSLSDGSYN NLQPVSDQFQ TLTLSYGAHS KIVDSQSLRS  300
LSLKYPNDKG AQDDIWSVLN LDLASQLELY GVTCVEPLIN LDNIFSVDAS NNSSANAKTD  360
GTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	3e-63	NAC family protein