PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279216.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23870.5 Da    PI: 10.3687
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF741.2e-231664149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i  k n qvtfskRr+g++KKA+EL++LC+++va+i+fs+ gk++ +
  XP_021279216.1 16 KKIAKKNNLQVTFSKRRTGLFKKASELCTLCGVDVAIIVFSPAGKVFSF 64
                    678999****************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVQKNQIQGR QKIAMKKIAK KNNLQVTFSK RRTGLFKKAS ELCTLCGVDV AIIVFSPAGK  60
VFSFGHPQVE STIDRFLTRS PSLHVSNTHS LVEAHRNANI QGLNVQLTRL LEMLEVQKRK  120
GEALEEIREA GRRQCWWQAP IDELGLNELK QLRIALEELN RNVKNQAHKV LVESNCWQFL  180
AANGIGGGVN NEANEMKAAS SVTQVYNLGH GLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-49M-type_MADS family protein