PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279215.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 680aa MW: 77848.7 Da PI: 7.5461

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	6.2e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++ k +r+r+++r+gC+a l+++k + ++w+vt ++++HnHel XP_021279215.1 63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPLKTSNDGKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVTGFVNHHNHELL 156 6************9998877356667999*************9******************9977779************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MMSEDAGQML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTNDAIPY IGQRFATHDA 60 AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPLKTSN DGKPQRNRKS 120 SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDQEDESI DLLRMCKNIK 240 EKDSNFKFEY TLDSNSRLEN IAWSYASSVQ SYDIFGDAVV FDTTHRLTAF DMPLGIWVGM 300 NNYGMPCFFG CVLLREENLR SLSWALKAFL GFMDGKAPQT ILTDQNMCLK EAIAIEMPTT 360 KYALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDSFGLHTN 420 RHIANLFALR SLWALPYLGS HFFAGMTTTG HSKAINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASILTPFAF SKLQEQLVLA AHYASFQLDD 540 GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTGN CFQIPERYLP 600 LRWRRFCTSP AKLPHSSSTD HTERIQLLQS MVSSLVAESA KSKERLDTAT EQVSILLSRI 660 REQPVTSQGV RDISPFHRNL

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MMSEDAGQML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTNDAIPY IGQRFATHDA  60
AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPLKTSN DGKPQRNRKS  120
SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDQEDESI DLLRMCKNIK  240
EKDSNFKFEY TLDSNSRLEN IAWSYASSVQ SYDIFGDAVV FDTTHRLTAF DMPLGIWVGM  300
NNYGMPCFFG CVLLREENLR SLSWALKAFL GFMDGKAPQT ILTDQNMCLK EAIAIEMPTT  360
KYALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDSFGLHTN  420
RHIANLFALR SLWALPYLGS HFFAGMTTTG HSKAINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASILTPFAF SKLQEQLVLA AHYASFQLDD  540
GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTGN CFQIPERYLP  600
LRWRRFCTSP AKLPHSSSTD HTERIQLLQS MVSSLVAESA KSKERLDTAT EQVSILLSRI  660
REQPVTSQGV RDISPFHRNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein