PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279206.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 769aa MW: 87555.4 Da PI: 4.766

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	244	272	1	29
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk 29 r+r++ne +r++R++i+s + Lr++ P+ XP_021279206.1 244 RKRKKNESDRKYRADIRSELKVLRKIKPE 272 6889*********************9776 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MSLPSHENPN ELTRHSNSSD ENVNEGSTCS WRPILPAMSP NELTQQLNSQ RQPEVEVEAG 60 SVAGNEDSSC SWRPFSPALS PNEMNHSLNS IFENLIAEQQ LKSPENFEVE TSSVAQTNDF 120 SPIWISFVTD MLSLGEDKPN EVPQQSNSPD QQLNSLAENL TADQLSNSQR DVEVGVGCFQ 180 PNRTHLDHEE RPSDQASNGR KQRGRTPRVT PFDIAKIQLD QAGASAEACN GQKRIRTEEQ 240 ENERKRKKNE SDRKYRADIR SELKVLRKIK PEYDRLMTMA SSFGGIDQLE SQINGMNSDI 300 HKLREEEVEY DMFQQGTEIP DRVPSMRANE VQVCGIEEMK SLSDKFKEME ADCHRLQLMK 360 SKYGEIEDIE SMLDKFKNME AESQRLAQIK MSFGGIDEIE LEIVRLKNME LQLERNKQMV 420 NQKELDSFQA SPGSLQQLEL DHIYRQLQKE ADLDRFEQLK SKYGGTEELE IKLDKFHWME 480 AELHKLEQIK SKFGGVDEME AEIYRLKEIE SQHDKQKELQ FFPESPGSLQ EERGAQSLDL 540 NGRSDAVSAD GINLMSPAAV RGTNTMHGMQ YSDVLVTKFM AKLDDGSVVS NVDRSSFKDL 600 DGEPKKVGKY CLPPSLVSTA EDIIKAYGDI TKKCKFSPRI IEVIYVLFCA AIKEMGDLSL 660 KQVTEEVMLK WRDAIRDADR SACDVEFAMK HLKQIAYGYF GLKAYNDHNS LKQRMTVLKA 720 EEEVLRKELE KKTNEMKAVK AKEGDLTSEQ CKVCQELADQ FLDKTISVF

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MSLPSHENPN ELTRHSNSSD ENVNEGSTCS WRPILPAMSP NELTQQLNSQ RQPEVEVEAG  60
SVAGNEDSSC SWRPFSPALS PNEMNHSLNS IFENLIAEQQ LKSPENFEVE TSSVAQTNDF  120
SPIWISFVTD MLSLGEDKPN EVPQQSNSPD QQLNSLAENL TADQLSNSQR DVEVGVGCFQ  180
PNRTHLDHEE RPSDQASNGR KQRGRTPRVT PFDIAKIQLD QAGASAEACN GQKRIRTEEQ  240
ENERKRKKNE SDRKYRADIR SELKVLRKIK PEYDRLMTMA SSFGGIDQLE SQINGMNSDI  300
HKLREEEVEY DMFQQGTEIP DRVPSMRANE VQVCGIEEMK SLSDKFKEME ADCHRLQLMK  360
SKYGEIEDIE SMLDKFKNME AESQRLAQIK MSFGGIDEIE LEIVRLKNME LQLERNKQMV  420
NQKELDSFQA SPGSLQQLEL DHIYRQLQKE ADLDRFEQLK SKYGGTEELE IKLDKFHWME  480
AELHKLEQIK SKFGGVDEME AEIYRLKEIE SQHDKQKELQ FFPESPGSLQ EERGAQSLDL  540
NGRSDAVSAD GINLMSPAAV RGTNTMHGMQ YSDVLVTKFM AKLDDGSVVS NVDRSSFKDL  600
DGEPKKVGKY CLPPSLVSTA EDIIKAYGDI TKKCKFSPRI IEVIYVLFCA AIKEMGDLSL  660
KQVTEEVMLK WRDAIRDADR SACDVEFAMK HLKQIAYGYF GLKAYNDHNS LKQRMTVLKA  720
EEEVLRKELE KKTNEMKAVK AKEGDLTSEQ CKVCQELADQ FLDKTISVF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	248	RKRKK
2	244	270	RKRKKNESDRKYRADIRSELKVLRKIK