PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279131.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 299aa    MW: 31317.5 Da    PI: 9.5946
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.8e-073962225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_021279131.1 39 KSKPCTKFFSTSGCPFGESCHFLH 62
                    7789******************** PP
2zf-CCCH27.74.7e-09104129227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     Ck+Gd+C+FaHg+
  XP_021279131.1 104 KTRLCNKFNTPEGCKFGDKCHFAHGE 129
                     8***********************96 PP
3zf-CCCH37.25e-12266290126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f++ G C +GdrC+FaHg
  XP_021279131.1 266 FKTKLCENFSK-GSCTFGDRCHFAHG 290
                     69*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MEFGGGRKRG RHEAALNGNG GLKKSKQEME SFPTGIGSKS KPCTKFFSTS GCPFGESCHF  60
LHYVPGGIKA VSQILGSNPA LPAASRSSVV LPSFPDGSSP PAVKTRLCNK FNTPEGCKFG  120
DKCHFAHGEW ELGKPTGPAY EDPRAMGPMP GRMASRMEPP SQGLGAAASF GASATAKISI  180
DASLAGAIIG KNGVNSKHIC RVTGAKLSIR ENESDPSSRN IELEGTFDQI KQASAMVREL  240
ILNVGSASGG SMKNPAMSGS GAANNFKTKL CENFSKGSCT FGDRCHFAHG TEELRKPGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-50C3H family protein