PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279077.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 345aa    MW: 37304.6 Da    PI: 8.4776
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18260294135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +l
  XP_021279077.1 260 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRL 294
                     99*****************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MNNSWFDKTF NGVNDDFFDD VIKYLDFPLE DVEANDGTGG GSSGEDVIKD FHLPLEDSGG  60
DGGGGGGEEW DCNFQNLEPP PANVLAGLSS GFYGDFFSDS LAKNLTVSCD GSSQLNQRSS  120
TTKASSSRSI TLNSESADLK GSNQFQTSSP VSVLESSSSC SAANLTPIDP NLSFLAKRGR  180
SKRRRVSTFN LQFSLPFISS TSSTSRGSNS LVGSESESES HLTEKSAKKR QKKKKNLTLL  240
SGSSEIKKSP SQQPVVVRKC MHCEVTKTPQ WREGPMGPKT LCNACGVRYR SGRLLPEYRP  300
AASPTFVPSL HSNSHKKVVE MRKKAKLPMS VMPSMLSIPP ENSFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-43GATA family protein