PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278989.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 469aa MW: 52133 Da PI: 4.9523

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l XP_021278989.1 9 KGPWTSTEDAILVDYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 56 79******************************************9986 PP
2	Myb_DNA-binding	53.1	7.2e-17	62	105	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +TteE+ ++++++++lG++ W++ a++++ gRt++++k++w++ XP_021278989.1 62 KGVFTTEEERRIIELHAKLGNK-WARMAAELP-GRTDNEIKNYWNT 105 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MRESCHLKKG PWTSTEDAIL VDYVKKHGEG NWNAVQKNSG LSRCGKSCRL RWANHLRPDL 60 KKGVFTTEEE RRIIELHAKL GNKWARMAAE LPGRTDNEIK NYWNTRIKRL QRAGLPIYPP 120 DLCLQVNRSQ EESQNAASLP NGDSYASNLL QSDAFEIPRV EFENLELNQG CLSYSPMLHD 180 IPANTMLKRV GSSYGYGLMF PIAHPTKRLR ESVSNYFSMP NQLTENAYRK RFDGPFEISS 240 PYDSNLNTND QPSFGIPPGS DAPLNSNFSP SEPMSGPIKL ELPSYQYSDT QEDSWVNPAY 300 PLPLVESVDN LIQSPSVEQA KSDYLTPQNS GLLEAVLHES QKLKTSKDDS CQQSSSTSVL 360 DDVTNFSLNH CEMEFEAHCD PNSPLAHSAA SVFSEFTPVS GSSSDEPQFI ESILGCNAKN 420 ETPSQMAVSR LDDFIGPGQF GHNNGCVRDK PSVTDAIAAL LGEDTYCGY

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MRESCHLKKG PWTSTEDAIL VDYVKKHGEG NWNAVQKNSG LSRCGKSCRL RWANHLRPDL  60
KKGVFTTEEE RRIIELHAKL GNKWARMAAE LPGRTDNEIK NYWNTRIKRL QRAGLPIYPP  120
DLCLQVNRSQ EESQNAASLP NGDSYASNLL QSDAFEIPRV EFENLELNQG CLSYSPMLHD  180
IPANTMLKRV GSSYGYGLMF PIAHPTKRLR ESVSNYFSMP NQLTENAYRK RFDGPFEISS  240
PYDSNLNTND QPSFGIPPGS DAPLNSNFSP SEPMSGPIKL ELPSYQYSDT QEDSWVNPAY  300
PLPLVESVDN LIQSPSVEQA KSDYLTPQNS GLLEAVLHES QKLKTSKDDS CQQSSSTSVL  360
DDVTNFSLNH CEMEFEAHCD PNSPLAHSAA SVFSEFTPVS GSSSDEPQFI ESILGCNAKN  420
ETPSQMAVSR LDDFIGPGQF GHNNGCVRDK PSVTDAIAAL LGEDTYCGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	1e-86	MYB family protein