PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278988.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 488aa MW: 54190.2 Da PI: 5.1371

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.2e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l XP_021278988.1 28 KGPWTSTEDAILVDYVKKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	53.1	7.6e-17	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +TteE+ ++++++++lG++ W++ a++++ gRt++++k++w++ XP_021278988.1 81 KGVFTTEEERRIIELHAKLGNK-WARMAAELP-GRTDNEIKNYWNT 124 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MRKGHSDLSS VEEGSRRGSM RESCHLKKGP WTSTEDAILV DYVKKHGEGN WNAVQKNSGL 60 SRCGKSCRLR WANHLRPDLK KGVFTTEEER RIIELHAKLG NKWARMAAEL PGRTDNEIKN 120 YWNTRIKRLQ RAGLPIYPPD LCLQVNRSQE ESQNAASLPN GDSYASNLLQ SDAFEIPRVE 180 FENLELNQGC LSYSPMLHDI PANTMLKRVG SSYGYGLMFP IAHPTKRLRE SVSNYFSMPN 240 QLTENAYRKR FDGPFEISSP YDSNLNTNDQ PSFGIPPGSD APLNSNFSPS EPMSGPIKLE 300 LPSYQYSDTQ EDSWVNPAYP LPLVESVDNL IQSPSVEQAK SDYLTPQNSG LLEAVLHESQ 360 KLKTSKDDSC QQSSSTSVLD DVTNFSLNHC EMEFEAHCDP NSPLAHSAAS VFSEFTPVSG 420 SSSDEPQFIE SILGCNAKNE TPSQMAVSRL DDFIGPGQFG HNNGCVRDKP SVTDAIAALL 480 GEDTYCGY

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MRKGHSDLSS VEEGSRRGSM RESCHLKKGP WTSTEDAILV DYVKKHGEGN WNAVQKNSGL  60
SRCGKSCRLR WANHLRPDLK KGVFTTEEER RIIELHAKLG NKWARMAAEL PGRTDNEIKN  120
YWNTRIKRLQ RAGLPIYPPD LCLQVNRSQE ESQNAASLPN GDSYASNLLQ SDAFEIPRVE  180
FENLELNQGC LSYSPMLHDI PANTMLKRVG SSYGYGLMFP IAHPTKRLRE SVSNYFSMPN  240
QLTENAYRKR FDGPFEISSP YDSNLNTNDQ PSFGIPPGSD APLNSNFSPS EPMSGPIKLE  300
LPSYQYSDTQ EDSWVNPAYP LPLVESVDNL IQSPSVEQAK SDYLTPQNSG LLEAVLHESQ  360
KLKTSKDDSC QQSSSTSVLD DVTNFSLNHC EMEFEAHCDP NSPLAHSAAS VFSEFTPVSG  420
SSSDEPQFIE SILGCNAKNE TPSQMAVSRL DDFIGPGQFG HNNGCVRDKP SVTDAIAALL  480
GEDTYCGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	9e-87	MYB family protein