PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278852.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 574aa MW: 64993.5 Da PI: 9.5671

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	29	83	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le+ Fe++ ++ +++ eLA++lgL+ rqV +WFqNrRa++k XP_021278852.1 29 KNKRRFSDEQIRLLESIFESETKLEPRKKLELARELGLQPRQVAIWFQNRRARWK 83 56789*************************************************9 PP
2	HD-ZIP_I/II	122.6	1.9e-39	30	121	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq++lLE+ Fe+e+kLep++K elareLglqprqva+WFqnrRAR+k+kq+E+dy++L+++yd+l+++ e+L+ke+++L +l++ XP_021278852.1 30 NKRRFSDEQIRLLESIFESETKLEPRKKLELARELGLQPRQVAIWFQNRRARWKSKQIEQDYRTLRANYDNLASRFESLKKEKQTLMLQLQS 121 79************************************************************************************999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MEREYHPAGH EEVAEQPPQT PRKKKNKMKN KRRFSDEQIR LLESIFESET KLEPRKKLEL 60 ARELGLQPRQ VAIWFQNRRA RWKSKQIEQD YRTLRANYDN LASRFESLKK EKQTLMLQLQ 120 SLSKLLAEPH DINKARKGLD TGGGSENGDT KCEPEAEVQP SFQQAGVEER GFLGLQIEND 180 RHIEHAAQPG DEFMSMEEYR NDSPASPEKL CGFDSSACIT CLSSSNQFAL PSSPVKSLKF 240 PLFWPWQRVK MGPLTVSPMG FGTWAWGNQL LWGYKESMDS ELQRVFNLAV ENGINLFDTA 300 DSYGTGRLNG QSEKLLGKFI REFRGEKRIE DEIVIATKFA AYPWRLTPGQ FVQACRASRD 360 RMQIEQIGIG QLHWSTANYA PPQELALWGG LVAMYEQGLV KAVGVSNYGP KQLVKIYDYL 420 KARGVPLRSA QVQFSLLSMG EEQMEIKNIC DSLGIRLISY SPLGLGMLTG KYTPSRLPSG 480 PRGLLFKQIL PGLEPLLVSL REIAEKRGKT VPQVAINWCI SKGTIPIPGV KSVKQAQENL 540 GALGWRLSSN ELLQLDYAAQ QSPRRMIQNI FQTK

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MEREYHPAGH EEVAEQPPQT PRKKKNKMKN KRRFSDEQIR LLESIFESET KLEPRKKLEL  60
ARELGLQPRQ VAIWFQNRRA RWKSKQIEQD YRTLRANYDN LASRFESLKK EKQTLMLQLQ  120
SLSKLLAEPH DINKARKGLD TGGGSENGDT KCEPEAEVQP SFQQAGVEER GFLGLQIEND  180
RHIEHAAQPG DEFMSMEEYR NDSPASPEKL CGFDSSACIT CLSSSNQFAL PSSPVKSLKF  240
PLFWPWQRVK MGPLTVSPMG FGTWAWGNQL LWGYKESMDS ELQRVFNLAV ENGINLFDTA  300
DSYGTGRLNG QSEKLLGKFI REFRGEKRIE DEIVIATKFA AYPWRLTPGQ FVQACRASRD  360
RMQIEQIGIG QLHWSTANYA PPQELALWGG LVAMYEQGLV KAVGVSNYGP KQLVKIYDYL  420
KARGVPLRSA QVQFSLLSMG EEQMEIKNIC DSLGIRLISY SPLGLGMLTG KYTPSRLPSG  480
PRGLLFKQIL PGLEPLLVSL REIAEKRGKT VPQVAINWCI SKGTIPIPGV KSVKQAQENL  540
GALGWRLSSN ELLQLDYAAQ QSPRRMIQNI FQTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	33	RKKKNKMKNKRR
2	78	86	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	1e-36	HD-ZIP family protein