PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278821.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HSF
Protein Properties Length: 279aa    MW: 32303.5 Da    PI: 8.2373
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-36251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+ +++++sw e+++sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv +++         weF++++F+kg+k+ll++
  XP_021278821.1  25 FLAKTYQLVDDPLTDHIVSWGEDETSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANEYFRKGEKHLLSE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_021278821.1 111 IHRRKT 116
                     ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MAFTMERCEE LVFSVESQKA VPAPFLAKTY QLVDDPLTDH IVSWGEDETS FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFKKVVT DRWEFANEYF RKGEKHLLSE IHRRKTPQNH  120
QDNHHEQQAQ LLKPEEGFGW IESPSPSPKA SADVLAALTQ DNQRLRRKNY MLVSELTHMK  180
NLYNDIIYFI QNHVKPVPYQ QKAYSLGPKI RELGPSFQDP IHSGNENAKS SVLGKSSMTP  240
TEEPNNTVKL FGVPLSGRKR LHPEKINQQE YLRCGVSTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-89HSF family protein