PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021278737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28261.7 Da PI: 7.43 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2.1e-11 | 29 | 75 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT Ed+l+ +a +l+ g +W +Ia++++ g+++k++k+++ ++ XP_021278737.1 29 HWTRFEDKLFEQALVMLPEGipdRWQKIAERVP-GKSAKEVKEHYEML 75 6********************************.***********887 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.5e-15 | 129 | 173 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_021278737.1 129 PWTEEEHKLFLIGLHKFGKGDWRSISRNVVVTRTPTQVASHAQKY 173 8*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence |
MYHDNSIINH NPFLTQPQPQ PSTQVLTSHW TRFEDKLFEQ ALVMLPEGIP DRWQKIAERV 60 PGKSAKEVKE HYEMLLYDVY EIDAGRIEIP SYADDSCLLS SSWDLDNQIS FEASKPKQHG 120 ENERKKGTPW TEEEHKLFLI GLHKFGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQSSV 180 KKERKRSSIH DITTVDSNTM DAPVNQNWIP VPGGPVQQVP SRHQLPTGSH LPAQGGSLGY 240 QNYSYPM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-82 | MYB family protein |