PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278571.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 696aa MW: 75329.3 Da PI: 5.3236

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	264	284	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_021278571.1 264 PCPEFRK-GSCRQGDNCEYAHG 284 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MEGESHKEDM LPQKFSVLLE FSASNDLIGF KSAIEEEGHD IDEPSLWYGR RIGSKKMGFE 60 ERTPLLIACM FGSKDVVNYI IGSGCVDVNR ACGSDGATAL HCAAAGGSFD SAEVVKILLD 120 ASADINSVDA NGNRPGELIT PACNSAFSLR KKMLEALLRG SGSVGEMEAL PAQNGNEMEG 180 QEQQDNSIAR VLKDGTEKKE YPVDLTLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE 240 CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCRQGDNCE YAHGIFECWL HPAQYRTRLC 300 KDETNCSRRV CFFAHKPEEL RPLYASTGSA VPSPRSYAAT GSSLDMGSMS PLALGSTSVM 360 IPPTSTPPLT PTGTSSPMGG AMWPTQSNII PPTLQLPGSR LKTALSARDM DLDMELLGLE 420 SHRRRQQQQL IDEISGLSSP TSWKNPLSSA SAFSASGDRT GELNRFGGVK PTNLEDIFGS 480 LDATILPQLQ GISLDATAPQ LQSPTGVQMR QNINQQLRAS YPTNLASSPV RASPSFGIDA 540 SSGPTAAAVL SSRSAAFAKR SQSFIDRTAV NRHSGFSSPT SSASAMHSNL SDWGSPDGKL 600 DWGIQGEELS KLRKSASFGF RSSGSNLANA APSMLPTADE PDVSWVQSLV KDTPSAGQLG 660 FDEEQQQQQC HLNSGGAEML PAWVEQLYME QEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MEGESHKEDM LPQKFSVLLE FSASNDLIGF KSAIEEEGHD IDEPSLWYGR RIGSKKMGFE  60
ERTPLLIACM FGSKDVVNYI IGSGCVDVNR ACGSDGATAL HCAAAGGSFD SAEVVKILLD  120
ASADINSVDA NGNRPGELIT PACNSAFSLR KKMLEALLRG SGSVGEMEAL PAQNGNEMEG  180
QEQQDNSIAR VLKDGTEKKE YPVDLTLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCRQGDNCE YAHGIFECWL HPAQYRTRLC  300
KDETNCSRRV CFFAHKPEEL RPLYASTGSA VPSPRSYAAT GSSLDMGSMS PLALGSTSVM  360
IPPTSTPPLT PTGTSSPMGG AMWPTQSNII PPTLQLPGSR LKTALSARDM DLDMELLGLE  420
SHRRRQQQQL IDEISGLSSP TSWKNPLSSA SAFSASGDRT GELNRFGGVK PTNLEDIFGS  480
LDATILPQLQ GISLDATAPQ LQSPTGVQMR QNINQQLRAS YPTNLASSPV RASPSFGIDA  540
SSGPTAAAVL SSRSAAFAKR SQSFIDRTAV NRHSGFSSPT SSASAMHSNL SDWGSPDGKL  600
DWGIQGEELS KLRKSASFGF RSSGSNLANA APSMLPTADE PDVSWVQSLV KDTPSAGQLG  660
FDEEQQQQQC HLNSGGAEML PAWVEQLYME QEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein