PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278517.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 517aa MW: 58316.4 Da PI: 7.1601

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le++++++r ps e++++LA++++Lte+q++ WF+ rR k+k+ XP_021278517.1 20 KKRTVKTPAQVMALENFYKEHRFPSDEMKAQLAAQIRLTEKQISSWFCHRRLKDKR 75 8*****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MEDSAEVQTE ENKVFLDVNK KRTVKTPAQV MALENFYKEH RFPSDEMKAQ LAAQIRLTEK 60 QISSWFCHRR LKDKRRDESY ANGRQDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV 120 ESRRIYGHDF PAADLTYERR SHQNPYNAHM EDTSSENSSS LHDQRFSESG DPYDMQISAN 180 LTQNGAITQI KPRIAKSMGY KPSGYLKVKG ELENPAITAV KRQLGRHYQE DGPLLGIEFD 240 PLPPGAFEFH SSNPVNEPIY VGDPRQDHSP DISGVLKQPN LNIINEVHNP KLSSQDSYVE 300 DAKLNTEHGS ERQDRKSHHQ LKYKSSFLCS NPFPGQNSSI NIYESSAGKT AVSDCKRSRM 360 SYKPAVERMG SDSFSNQPGP YGWKIANEQE KPWLHDDDNH TYKAPKNENL SKTSNLIHGC 420 SESQGTERGP SARMAKLEKL GGEWKPKRGY PVRENIDPTN ELKVAKRVKV EFPQQNFVAN 480 ASHSRLPLLT NPTKGSSMDV PSSFSEDETA ETSSSLD

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MEDSAEVQTE ENKVFLDVNK KRTVKTPAQV MALENFYKEH RFPSDEMKAQ LAAQIRLTEK  60
QISSWFCHRR LKDKRRDESY ANGRQDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV  120
ESRRIYGHDF PAADLTYERR SHQNPYNAHM EDTSSENSSS LHDQRFSESG DPYDMQISAN  180
LTQNGAITQI KPRIAKSMGY KPSGYLKVKG ELENPAITAV KRQLGRHYQE DGPLLGIEFD  240
PLPPGAFEFH SSNPVNEPIY VGDPRQDHSP DISGVLKQPN LNIINEVHNP KLSSQDSYVE  300
DAKLNTEHGS ERQDRKSHHQ LKYKSSFLCS NPFPGQNSSI NIYESSAGKT AVSDCKRSRM  360
SYKPAVERMG SDSFSNQPGP YGWKIANEQE KPWLHDDDNH TYKAPKNENL SKTSNLIHGC  420
SESQGTERGP SARMAKLEKL GGEWKPKRGY PVRENIDPTN ELKVAKRVKV EFPQQNFVAN  480
ASHSRLPLLT NPTKGSSMDV PSSFSEDETA ETSSSLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RRLKDKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-93	HB-other family protein