PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278395.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 346aa MW: 38748.2 Da PI: 5.603

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.7e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+d+++ +G g+W+t +++ g++R++k+c++rw +yl XP_021278395.1 15 KGPWSPEEDQKLIDYINNHGHGSWRTLPKHAGLNRCGKSCRLRWANYL 62 79********************************************97 PP
2	Myb_DNA-binding	52.7	9.8e-17	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+ ++++++ lG++ W++Ia +++ gRt++++k++w+++ XP_021278395.1 68 RGKYSEEEERIIINLHSVLGNK-WSKIATHLP-GRTDNEIKNFWNTH 112 899*****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSPCCSDE ANLKKGPWSP EEDQKLIDYI NNHGHGSWRT LPKHAGLNRC GKSCRLRWAN 60 YLRPDIKRGK YSEEEERIII NLHSVLGNKW SKIATHLPGR TDNEIKNFWN THIRKKLLNM 120 GLDPNTHKSR TDLNHLLNQS QLLCAAQLGN LMNPWDSTAF KVQADAAELA KIQLLLNLMQ 180 ILNTNKLSNV SAGLIGPQNS YPFEGVGLVN GTSTVCANET ASIPQNFQST GSMTQTSSDY 240 QQGADDSWAC FEGQFKYESP DMNDKCLSSS CDFQTENSLS ALVSESPEIF SMNQMENKTN 300 PNHCSTISAD TSIFQAWEKL MDDETGDSYW KDILDLTSSS SSPIEW

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSPCCSDE ANLKKGPWSP EEDQKLIDYI NNHGHGSWRT LPKHAGLNRC GKSCRLRWAN  60
YLRPDIKRGK YSEEEERIII NLHSVLGNKW SKIATHLPGR TDNEIKNFWN THIRKKLLNM  120
GLDPNTHKSR TDLNHLLNQS QLLCAAQLGN LMNPWDSTAF KVQADAAELA KIQLLLNLMQ  180
ILNTNKLSNV SAGLIGPQNS YPFEGVGLVN GTSTVCANET ASIPQNFQST GSMTQTSSDY  240
QQGADDSWAC FEGQFKYESP DMNDKCLSSS CDFQTENSLS ALVSESPEIF SMNQMENKTN  300
PNHCSTISAD TSIFQAWEKL MDDETGDSYW KDILDLTSSS SSPIEW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17785.1	3e-90	MYB family protein