PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278361.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 406aa MW: 45539.3 Da PI: 6.6272

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.7e-49	19	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF+Ptd el+++yLkkk++g + + evi+e++i+++ePwdLp k+v ++++ew+fF+ r +ky++g++++rat++gyWkatgk+++v+s XP_021278361.1 19 MFPGFRFSPTDVELISYYLKKKLDGYDKCV-EVISEIEICRHEPWDLPaKSVIKSDNEWFFFCARGRKYPNGSQSRRATEQGYWKATGKERNVKS 112 579*********************9777.99***********667777899********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf+ grapkge+t+W+mhey + XP_021278361.1 113 -GSNVIGTKRTLVFHMGRAPKGERTEWIMHEYCM 145 .99***************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLKKK LDGYDKCVEV ISEIEICRHE 60 PWDLPAKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK 120 RTLVFHMGRA PKGERTEWIM HEYCMNGKSQ DSLVVCRLRK NSEFRLSNTS NQAPQDQQLS 180 TMHDSRATSD GGTDQTGISE GDKAVEFNSK KVTSSYDSHS IEQIDSASES EEKHSNDVAP 240 TESSTPLKDS DDEEDYFAEI LKDDIIKLDE TSLSAMPPDI LPMLASTSDA ERRTQLPRQE 300 NVPHASPFQG TANRRIKLRR PKADILCDGA SGSVVGELAV EKLTSPKIEE SPKCLLSIFS 360 PRTANPRLIY ASFVTLTLLV LFLCLIGDSK SVKKFKYATF CKNFWQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLKKK LDGYDKCVEV ISEIEICRHE  60
PWDLPAKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK  120
RTLVFHMGRA PKGERTEWIM HEYCMNGKSQ DSLVVCRLRK NSEFRLSNTS NQAPQDQQLS  180
TMHDSRATSD GGTDQTGISE GDKAVEFNSK KVTSSYDSHS IEQIDSASES EEKHSNDVAP  240
TESSTPLKDS DDEEDYFAEI LKDDIIKLDE TSLSAMPPDI LPMLASTSDA ERRTQLPRQE  300
NVPHASPFQG TANRRIKLRR PKADILCDGA SGSVVGELAV EKLTSPKIEE SPKCLLSIFS  360
PRTANPRLIY ASFVTLTLLV LFLCLIGDSK SVKKFKYATF CKNFWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	320	NRRIKLRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	6e-95	NAC family protein