PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021278278.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 318aa    MW: 35203.3 Da    PI: 5.2272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021278278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.5e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_021278278.1 25 KGLWSPEEDDKLMNYMITNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                     678*******************************************97 PP
2Myb_DNA-binding52.61e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
   XP_021278278.1  78 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MMRKPDPSAK GSNGGNNNGT NKLRKGLWSP EEDDKLMNYM ITNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEELIV HLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNL SSTPSPNASD SSSEPNKNAM AGFMSMQEQG ILPVYMDLSS TSPNSSLQSM  180
VLNHTGKSLP TLEAGLNVFG ATGCFNPASC VTQVGVNGDS FYGENEIFGS VDNGVERELY  240
VPPLESIGEN LKTENTYDRN INNPFNIINS TNNNNYKAEN IAGAVGNFWL GEEIKVGEWD  300
LEDLMKDVSS FPFLDFQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-70MYB family protein